Metamenu

Effective results for Rhodopseudomonas palustris CGA009 (eggnog40)

Summary

Number of putative secreted proteins: 160
- Predicted by T4SEpre: 112
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 68 proteins (0 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
258594.RPA2426+ER
258594.RPA2880(PF13468)(ER); (plastid)
258594.RPA0823(PF14295)ER
258594.RPA3146+ER
258594.RPA4449+ER
258594.RPA3435(PF01697)(mitochondrial); mitochondrial
258594.RPA3099(PF07298)ER
258594.RPA1547(PF03209)mitochondrial; (mitochondrial)
258594.RPA0032(PF00565)mitochondrial
258594.RPA3096+ER
258594.RPA3886+(mitochondrial); plastid
258594.RPA3081+ER
258594.RPA1024(PF08022)mitochondrial
258594.RPA0864+mitochondrial
258594.RPA0860+ER
258594.RPA3744(PF00839)ER
258594.RPA3185+ER
258594.RPA2617(PF00148)mitochondrial
258594.RPA2835(PF07298)ER
258594.RPA0509+mitochondrial
258594.RPA1493(PF03209)(ER); ER
258594.RPA2367+ER
258594.RPA4188+(ER)
258594.RPA4563(PF00565)ER
258594.RPA3502+ER
258594.RPA4222+ER; (ER)
258594.RPA3720+(mitochondrial)
258594.RPA2488+ER; (ER)
258594.RPA0791(PF00565)(mitochondrial)
258594.RPA3652+mitochondrial
258594.RPA1662+ER
258594.RPA2785(PF08022)ER; (ER)
258594.RPA1782+ER
258594.RPA0258+ER
258594.RPA3814+(ER); plastid
258594.RPA3679+ER; mitochondrial
258594.RPA0102+ER
258594.RPA1410+ER
258594.RPA2475+ER; (ER)
258594.RPA2858(PF02931)ER
258594.RPA4139+mitochondrial; plastid
258594.RPA3309+ER
258594.RPA2047+ER
258594.RPA1482+ER
258594.RPA1857+ER
258594.RPA1531(PF03209)ER
258594.RPA1967+ER; (ER)
258594.RPA3599+ER
258594.RPA3925+(plastid)
258594.RPA4616(PF00148)plastid
258594.RPA1017+(mitochondrial)
258594.RPA1372(PF00148)(plastid)
258594.RPA1559(PF00016) (PF02788)
258594.RPA1485(PF07298)(mitochondrial)
258594.RPA0990(PF00360) (PF08446)
258594.RPA1490(PF00360) (PF08446)
258594.RPA0262(PF00016) (PF02788)
258594.RPA0639+(ER)
258594.RPA2649+(mitochondrial)
258594.RPA4177+(ER)
258594.RPA0304+plastid
258594.RPA0645+(plastid)
258594.RPA2261(PF00958)(ER)
258594.RPA3015(PF00360) (PF08446)
258594.RPA3016(PF00360) (PF08446)
258594.RPA1086+(mitochondrial)
258594.RPA2855+(plastid)
258594.RPA0122(PF00360) (PF08446)
258594.RPA1336+(ER)
258594.RPA4476+(mitochondrial)
258594.RPA2523+(mitochondrial)
258594.RPA4641(PF00016) (PF02788)
258594.RPA1378(PF00148)
258594.RPA2559(PF01053)
258594.RPA0486(PF00565)
258594.RPA0559+
258594.RPA4251(PF01053)
258594.RPA4617(PF00148)
258594.RPA2742+
258594.RPA1569(PF01053)
258594.RPA1380(PF00148)
258594.RPA0493+
258594.RPA0015+
258594.RPA2978+
258594.RPA1373(PF00148)
258594.RPA4525+
258594.RPA0848+
258594.RPA1542(PF00148)
258594.RPA1543(PF00148)
258594.RPA1549+
258594.RPA1147+
258594.RPA2363(PF00148)
258594.RPA2362(PF01053)
258594.RPA0143+
258594.RPA3958(PF01442)
258594.RPA4730+
258594.RPA3776+
258594.RPA2772+
258594.RPA1839+
258594.RPA2350(PF01053)
258594.RPA2357(PF01053)
258594.RPA0608+
258594.RPA1931+
258594.RPA0463+
258594.RPA4619(PF00148)
258594.RPA4618(PF00148)
258594.RPA3985+
258594.RPA3180+
258594.RPA2169(PF00016)
258594.RPA4229+
258594.RPA2293+
258594.RPA2763(PF01053)
258594.RPA2908+
258594.RPA2347(PF00148)
258594.RPA2616(PF00148)
258594.RPA2349(PF01053)
258594.RPA2348(PF00148)
258594.RPA1904+
258594.RPA2364(PF00148)
258594.RPA1133+
258594.RPA2332(PF00565)
258594.RPA3038+
258594.RPA2033+
258594.RPA2637(PF00148)
258594.RPA2636(PF00148)
258594.RPA0897+
258594.RPA1659+
258594.RPA3057+
258594.RPA2648(PF13468)
258594.RPA1668+
258594.RPA4766(PF01053)
258594.RPA3780(PF13468)
258594.RPA2279+
258594.RPA1304+
258594.RPA4154+
258594.RPA3538+
258594.RPA4445(PF00839)
258594.RPA3227+
258594.RPA3319+
258594.RPA2625(PF01053)
258594.RPA3524+
258594.RPA2203(PF00958)
258594.RPA4456+
258594.RPA1524(PF00148)
258594.RPA1523(PF00148)
258594.RPA4130+
258594.RPA0348+
258594.RPA4663+
258594.RPA4591(PF01053)
258594.RPA2191+
258594.RPA0371(PF01053)
258594.RPA1638+
258594.RPA3612+
258594.RPA1435(PF00148)
258594.RPA1437(PF00148)
258594.RPA1294+
258594.RPA3499+
258594.RPA2527(PF00940)
258594.RPA0567+
258594.RPA3735+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.2 (12/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================