Effective results for Streptococcus mitis NCTC 12261 (eggnog40)
Summary
Number of putative secreted proteins: 62
- Predicted by T4SEpre: 66
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 12 proteins (4 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
246201.SM12261_1312 | + | ER | |||
246201.SM12261_1267 | (PF03083) | ER | |||
246201.SM12261_0792 | + | ER | |||
246201.SM12261_0712 | + | ER | |||
246201.SM12261_0177 | + | ER | |||
246201.SM12261_0386 | + | (mitochondrial); (plastid) | |||
246201.SM12261_1623 | + | ER | |||
246201.SM12261_0959 | + | ER | |||
246201.SM12261_0595 | + | (mitochondrial) | |||
246201.SM12261_0750 | + | ER | |||
246201.SM12261_0919 | PF04103 | ER | |||
246201.SM12261_1371 | + | ER | |||
246201.SM12261_0002 | + | mitochondrial; (mitochondrial) | |||
246201.SM12261_0796 | + | ER | |||
246201.SM12261_0810 | (PF03083) | (ER) | |||
246201.SM12261_0988 | PF02916 | (ER) | |||
246201.SM12261_0493 | + | ER | |||
246201.SM12261_0700 | + | (ER) | |||
246201.SM12261_1177 | + | (mitochondrial) | |||
246201.SM12261_0484 | + | (mitochondrial) | |||
246201.SM12261_0268 | + | ||||
246201.SM12261_1241 | + | ||||
246201.SM12261_0878 | + | ||||
246201.SM12261_1011 | + | ||||
246201.SM12261_0304 | PF00312 | ||||
246201.SM12261_1272 | + | ||||
246201.SM12261_0849 | + | ||||
246201.SM12261_0206 | + | ||||
246201.SM12261_1548 | + | ||||
246201.SM12261_0986 | + | ||||
246201.SM12261_0506 | + | ||||
246201.SM12261_0358 | + | ||||
246201.SM12261_0883 | + | ||||
246201.SM12261_1614 | (PF04991) | ||||
246201.SM12261_1613 | (PF04991) | ||||
246201.SM12261_1051 | + | ||||
246201.SM12261_1432 | + | ||||
246201.SM12261_0522 | (PF03644) | ||||
246201.SM12261_1400 | + | ||||
246201.SM12261_1158 | + | ||||
246201.SM12261_0951 | (PF03596) | ||||
246201.SM12261_0775 | + | ||||
246201.SM12261_1091 | + | ||||
246201.SM12261_0942 | + | ||||
246201.SM12261_0945 | + | ||||
246201.SM12261_0388 | + | ||||
246201.SM12261_0769 | + | ||||
246201.SM12261_0619 | + | ||||
246201.SM12261_1393 | + | ||||
246201.SM12261_0323 | PF00312 | ||||
246201.SM12261_0299 | (PF03596) | ||||
246201.SM12261_0108 | + | ||||
246201.SM12261_0566 | + | ||||
246201.SM12261_1195 | + | ||||
246201.SM12261_1346 | + | ||||
246201.SM12261_0123 | (PF04991) | ||||
246201.SM12261_1537 | + | ||||
246201.SM12261_0791 | + | ||||
246201.SM12261_0062 | + | ||||
246201.SM12261_0668 | + | ||||
246201.SM12261_1039 | + | ||||
246201.SM12261_0860 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0 (0/0 KEGG proteins)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0 (0/0 KEGG proteins)