Effective results for Carboxydothermus hydrogenoformans Z-2901 (eggnog40)

Summary

Number of putative secreted proteins: 70
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 70 proteins (7 high, 63 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
246194.CHY_2406				(PF13183) (PF02754)	(mitochondrial)
246194.CHY_0014				(PF01969)	ER
246194.CHY_0584				(PF14330)	(mitochondrial)
246194.CHY_0834				PF05701 PF08317
246194.CHY_1836				(PF13183) (PF02754)
246194.CHY_1327				(PF13183) (PF02754)
246194.CHY_2403				(PF13183) (PF02754)
246194.CHY_0484				PF07476 PF05034
246194.CHY_0582				PF07476 PF05034
246194.CHY_0433				(PF13183) (PF02754)
246194.CHY_0436				(PF13183) (PF02754)
246194.CHY_0695				(PF07837) (PF02971)
246194.CHY_0889				(PF06968)	(mitochondrial)
246194.CHY_1598				(PF13183) (PF02754)
246194.CHY_0714				(PF02754) (PF13534)
246194.CHY_1299				(PF13183) (PF02754)
246194.CHY_2031				(PF02754) (PF13534)
246194.CHY_2037				(PF02754) (PF13534)
246194.CHY_1824				(PF03063)
246194.CHY_2598				(PF02915)
246194.CHY_2448				(PF06968)
246194.CHY_2272				(PF02915)
246194.CHY_1069				(PF00731)
246194.CHY_2251				(PF02915)
246194.CHY_0034				(PF03063)
246194.CHY_1816				(PF03063)
246194.CHY_1263				(PF06968)
246194.CHY_2408				PF02295
246194.CHY_2536				(PF01909)
246194.CHY_0015				(PF00731)
246194.CHY_1879				(PF04961)
246194.CHY_1051				PF10639
246194.CHY_0488				(PF01869)
246194.CHY_1190				(PF01909)
246194.CHY_0929				(PF02754)
246194.CHY_0927				(PF13534)
246194.CHY_0622				(PF09419)
246194.CHY_1185				(PF01869)
246194.CHY_1229				(PF02754)
246194.CHY_1228				(PF13183)
246194.CHY_0848				(PF01869)
246194.CHY_0932				(PF13534)
246194.CHY_1716				(PF01909)
246194.CHY_0069				(PF01909)
246194.CHY_0064				(PF13183)
246194.CHY_0065				(PF02754)
246194.CHY_1883				(PF01909)
246194.CHY_1411				(PF01869)
246194.CHY_1896				(PF01909)
246194.CHY_2604				(PF02915)
246194.CHY_0736				(PF03063)
246194.CHY_0738				(PF02915)
246194.CHY_1952				(PF01869)
246194.CHY_1549				(PF06968)
246194.CHY_0696				(PF04961)
246194.CHY_0148				(PF02754)
246194.CHY_0147				(PF13183)
246194.CHY_0568				(PF02915)
246194.CHY_2490				PF08317
246194.CHY_2495				(PF01909)
246194.CHY_1370				(PF13183)
246194.CHY_1283				(PF01969)
246194.CHY_1282				(PF00731)
246194.CHY_2008				PF00261
246194.CHY_0085				(PF03063)
246194.CHY_0080				(PF01909)
246194.CHY_2482				(PF01909)
246194.CHY_0311				(PF01869)
246194.CHY_1111				(PF01909)
246194.CHY_1118				(PF13534)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================