Effective results for Labrenzia alexandrii DFL-11 (eggnog40)

Summary

Number of putative secreted proteins: 244
- Predicted by T4SEpre: 122
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 141 proteins (7 high, 134 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
244592.SADFL11_3137+(PF12974)ER
244592.SADFL11_2127+(PF13502)ER
244592.SADFL11_505(PF03480)ER
244592.SADFL11_4932+mitochondrial; (mitochondrial)
244592.SADFL11_2841(PF00497)ER
244592.SADFL11_2192+mitochondrial
244592.SADFL11_3156(PF00497)ER
244592.SADFL11_377+ER
244592.SADFL11_1714(PF03480)ER
244592.SADFL11_2362(PF00497)ER
244592.SADFL11_3379(PF16350)ER
244592.SADFL11_2764(PF00497)ER
244592.SADFL11_2086+ER
244592.SADFL11_3564+(mitochondrial)
244592.SADFL11_1524(PF00497)(ER)
244592.SADFL11_3821(PF08022)ER
244592.SADFL11_2376(PF03480)ER; (ER)
244592.SADFL11_3363+ER
244592.SADFL11_4743(PF00497)ER
244592.SADFL11_3288(PF00497)ER; (ER)
244592.SADFL11_4927(PF00497)ER
244592.SADFL11_2180(PF03480)mitochondrial
244592.SADFL11_5291(PF12974)ER
244592.SADFL11_3612+ER
244592.SADFL11_1109(PF00497)ER
244592.SADFL11_2988(PF00497)(ER)
244592.SADFL11_3675+mitochondrial
244592.SADFL11_4758(PF00497)ER
244592.SADFL11_4347(PF00497)ER
244592.SADFL11_3581+ER
244592.SADFL11_1472(PF00497)ER
244592.SADFL11_4516(PF03480)mitochondrial
244592.SADFL11_2759(PF00497)mitochondrial
244592.SADFL11_1267(PF09731)(ER); ER
244592.SADFL11_1249+ER
244592.SADFL11_249(PF00497)ER
244592.SADFL11_60(PF12974)ER
244592.SADFL11_3635+ER
244592.SADFL11_3929+ER
244592.SADFL11_3347+(mitochondrial)
244592.SADFL11_4356(PF00497)ER; (ER)
244592.SADFL11_2206(PF00497)ER
244592.SADFL11_3251+ER
244592.SADFL11_796+ER
244592.SADFL11_872(PF03480)(mitochondrial); (plastid)
244592.SADFL11_4216(PF13502)ER
244592.SADFL11_1307(PF00497)ER
244592.SADFL11_5168(PF00497)ER; (ER)
244592.SADFL11_5163(PF13502)ER
244592.SADFL11_911+ER
244592.SADFL11_645(PF00497)(ER); (mitochondrial)
244592.SADFL11_4966(PF12974)ER
244592.SADFL11_4969PF04832(mitochondrial)
244592.SADFL11_263+(ER)
244592.SADFL11_4374+ER
244592.SADFL11_5150(PF03480)mitochondrial; (mitochondrial)
244592.SADFL11_2225(PF00497)ER
244592.SADFL11_3301PF04832ER
244592.SADFL11_676+ER
244592.SADFL11_672+(mitochondrial)
244592.SADFL11_1657(PF03480)ER
244592.SADFL11_4971(PF03480)ER
244592.SADFL11_4155(PF14248)ER
244592.SADFL11_5336(PF13502)ER
244592.SADFL11_2825(PF03480)ER
244592.SADFL11_1174+ER
244592.SADFL11_3475(PF01847)ER
244592.SADFL11_5327(PF03480)ER
244592.SADFL11_4317(PF06455)ER
244592.SADFL11_5043(PF00497)ER
244592.SADFL11_2481+ER
244592.SADFL11_2489(PF00413)ER
244592.SADFL11_2064(PF03480)ER
244592.SADFL11_779PF10563ER
244592.SADFL11_3444(PF16350)ER; (ER)
244592.SADFL11_949(PF00497)ER
244592.SADFL11_1972(PF03480)ER
244592.SADFL11_2474(PF12974)ER
244592.SADFL11_3410+ER
244592.SADFL11_1593(PF00497)ER
244592.SADFL11_2120+ER; (mitochondrial)
244592.SADFL11_2615(PF00497)ER
244592.SADFL11_630(PF00497)(mitochondrial); (plastid)
244592.SADFL11_2040(PF00497)(ER); ER
244592.SADFL11_4994(PF03480)ER
244592.SADFL11_1580+ER
244592.SADFL11_305(PF08022)ER
244592.SADFL11_4453(PF03480)(ER)
244592.SADFL11_3951+ER
244592.SADFL11_1774(PF14707)ER; (ER)
244592.SADFL11_1002(PF03480)(mitochondrial)
244592.SADFL11_4421+ER; (ER)
244592.SADFL11_157(PF00497)(mitochondrial)
244592.SADFL11_3559+ER
244592.SADFL11_2854+(ER)
244592.SADFL11_2399(PF03480)(mitochondrial)
244592.SADFL11_1633(PF00497)(ER)
244592.SADFL11_2418+mitochondrial
244592.SADFL11_3286(PF04325)(mitochondrial)
244592.SADFL11_3903+plastid
244592.SADFL11_4763(PF14248)(ER)
244592.SADFL11_302(PF00497)(plastid)
244592.SADFL11_3790(PF03480)(mitochondrial)
244592.SADFL11_2535+(mitochondrial)
244592.SADFL11_4791(PF00497)(plastid)
244592.SADFL11_933(PF00497)(mitochondrial)
244592.SADFL11_4622(PF00497)plastid
244592.SADFL11_4188(PF00497)(mitochondrial)
244592.SADFL11_4298(PF00497)plastid
244592.SADFL11_407+(mitochondrial)
244592.SADFL11_4076(PF00497)
244592.SADFL11_1613+
244592.SADFL11_3946+
244592.SADFL11_2444(PF01442)
244592.SADFL11_3323+
244592.SADFL11_367(PF00497)
244592.SADFL11_762+
244592.SADFL11_212+
244592.SADFL11_1496(PF00497)
244592.SADFL11_1491+
244592.SADFL11_1728(PF04862)
244592.SADFL11_2844(PF10013)not used
244592.SADFL11_2620+
244592.SADFL11_5015(PF01321)
244592.SADFL11_5013+
244592.SADFL11_2716+
244592.SADFL11_4491(PF03480)
244592.SADFL11_4725+
244592.SADFL11_3386+
244592.SADFL11_4133PF14700
244592.SADFL11_2949+
244592.SADFL11_1147(PF00497)
244592.SADFL11_2893+
244592.SADFL11_4480(PF00497)
244592.SADFL11_2081(PF13502)
244592.SADFL11_3566+
244592.SADFL11_3562(PF03209)
244592.SADFL11_2371(PF06080)
244592.SADFL11_1280(PF00497)
244592.SADFL11_1197(PF01321)
244592.SADFL11_3281(PF06080)
244592.SADFL11_1738PF03492
244592.SADFL11_1732+
244592.SADFL11_4818+
244592.SADFL11_3359(PF00497)
244592.SADFL11_1605+
244592.SADFL11_5296+
244592.SADFL11_5297+
244592.SADFL11_3610+
244592.SADFL11_4242(PF13023)
244592.SADFL11_3831+
244592.SADFL11_1189PF04832
244592.SADFL11_2573+
244592.SADFL11_2571+
244592.SADFL11_4842+
244592.SADFL11_1987(PF01321)
244592.SADFL11_598+
244592.SADFL11_3589+
244592.SADFL11_2197(PF00497)
244592.SADFL11_4028(PF07958)
244592.SADFL11_2976+
244592.SADFL11_2975+
244592.SADFL11_1060(PF03480)
244592.SADFL11_3809(PF03480)
244592.SADFL11_1450(PF00413)
244592.SADFL11_1451+
244592.SADFL11_4764(PF13502)
244592.SADFL11_4311+
244592.SADFL11_1884+
244592.SADFL11_2215+
244592.SADFL11_4908+
244592.SADFL11_797(PF01321)
244592.SADFL11_1661(PF16350)
244592.SADFL11_3638+
244592.SADFL11_4162(PF03209)
244592.SADFL11_4250+
244592.SADFL11_3922(PF01321)
244592.SADFL11_1319+
244592.SADFL11_3103+
244592.SADFL11_791+
244592.SADFL11_3710+
244592.SADFL11_3792(PF16350)
244592.SADFL11_4368(PF00497)
244592.SADFL11_3078+
244592.SADFL11_4471(PF00497)
244592.SADFL11_1427+
244592.SADFL11_1428(PF00497)
244592.SADFL11_2830(PF16350)
244592.SADFL11_5309+
244592.SADFL11_4371(PF00497)
244592.SADFL11_2654+not used
244592.SADFL11_2741+
244592.SADFL11_4063(PF00497)
244592.SADFL11_1927+
244592.SADFL11_2312+
244592.SADFL11_3276(PF01321)
244592.SADFL11_4100+
244592.SADFL11_1781+
244592.SADFL11_1327(PF00413)
244592.SADFL11_3843+
244592.SADFL11_3418+
244592.SADFL11_4525(PF04325)
244592.SADFL11_544+
244592.SADFL11_3204(PF03480)
244592.SADFL11_2109(PF00497)
244592.SADFL11_3893+
244592.SADFL11_1333+
244592.SADFL11_2678+
244592.SADFL11_2244+
244592.SADFL11_4888(PF03480)
244592.SADFL11_2802(PF04325)
244592.SADFL11_1342+
244592.SADFL11_175(PF00497)
244592.SADFL11_2585(PF14707)
244592.SADFL11_426+
244592.SADFL11_2290+
244592.SADFL11_1627(PF14707)
244592.SADFL11_1754+
244592.SADFL11_2126+
244592.SADFL11_1211+
244592.SADFL11_4423(PF01321)
244592.SADFL11_1105(PF13023)
244592.SADFL11_4512PF03492
244592.SADFL11_2266(PF12974)
244592.SADFL11_4605+
244592.SADFL11_811+
244592.SADFL11_3236(PF00497)
244592.SADFL11_3235+
244592.SADFL11_2289(PF04325)not used
244592.SADFL11_1741(PF01321)
244592.SADFL11_569(PF12974)
244592.SADFL11_2133(PF00497)
244592.SADFL11_4196(PF00940)
244592.SADFL11_650(PF00497)
244592.SADFL11_2863+
244592.SADFL11_1172+
244592.SADFL11_5103+
244592.SADFL11_2603(PF13023)
244592.SADFL11_4674+
244592.SADFL11_1954(PF03480)
244592.SADFL11_392(PF03480)
244592.SADFL11_399(PF16350)
244592.SADFL11_400+
244592.SADFL11_4308+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================