Metamenu

Effective results for Acidobacterium capsulatum ATCC 51196 (eggnog40)

Summary

Number of putative secreted proteins: 129
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 129 proteins (59 high, 70 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
240015.ACP_2528(PF16334) (PF16335) (PF17168) (PF08760)mitochondrial
240015.ACP_0916(PF15902) (PF02012)ER
240015.ACP_0537PF13620ER
240015.ACP_1489PF13620ER
240015.ACP_2599(PF09286)mitochondrial
240015.ACP_2752(PF10282)(mitochondrial)
240015.ACP_0549PF13620ER
240015.ACP_1493PF13620ER
240015.ACP_0303PF13620ER
240015.ACP_0304PF13620(mitochondrial); (plastid)
240015.ACP_1300(PF09286)ER
240015.ACP_2408PF13620ER
240015.ACP_3365(PF05935)ER
240015.ACP_2768(PF12704)mitochondrial
240015.ACP_3141PF13620ER
240015.ACP_1578(PF01229)ER
240015.ACP_2778PF13620ER
240015.ACP_2797PF13620ER
240015.ACP_1567(PF12704)(mitochondrial); mitochondrial
240015.ACP_0561PF13620ER
240015.ACP_3430(PF01229)ER
240015.ACP_0023PF13620mitochondrial
240015.ACP_0796PF10712ER
240015.ACP_0774PF13620ER
240015.ACP_1517(PF00154)mitochondrial; (mitochondrial)
240015.ACP_1358(PF15902)ER
240015.ACP_1350PF13620mitochondrial; (mitochondrial)
240015.ACP_2151PF13620ER
240015.ACP_2155PF13620ER
240015.ACP_0805(PF13506)ER
240015.ACP_3207(PF12704)mitochondrial
240015.ACP_3112(PF02012)ER
240015.ACP_2526PF13620ER
240015.ACP_3219PF13620ER
240015.ACP_3213(PF12704)(ER); ER
240015.ACP_1982PF13620ER
240015.ACP_1759PF13620ER
240015.ACP_2534(PF12704)mitochondrial
240015.ACP_0910PF13620ER; (ER)
240015.ACP_0729PF13620ER
240015.ACP_2951(PF10282)ER
240015.ACP_1528(PF12704)mitochondrial
240015.ACP_1258PF13620ER; (ER)
240015.ACP_2051(PF09752)mitochondrial; (mitochondrial)
240015.ACP_2509(PF12704)(mitochondrial)
240015.ACP_2508(PF12704)(mitochondrial)
240015.ACP_3278PF13620ER
240015.ACP_0923(PF04253)ER
240015.ACP_3499PF13620ER
240015.ACP_0118(PF10282)ER
240015.ACP_1398PF13620mitochondrial
240015.ACP_1267PF13620ER
240015.ACP_1261PF13620ER
240015.ACP_2510(PF12704)(mitochondrial)
240015.ACP_2519PF13620(ER)
240015.ACP_2269PF13620ER
240015.ACP_3021PF13620ER
240015.ACP_2676PF13620(mitochondrial)
240015.ACP_1042(PF13506)ER
240015.ACP_1288(PF16670)(ER)
240015.ACP_2664(PF12222)ER
240015.ACP_2717PF13620ER
240015.ACP_3539PF13620ER
240015.ACP_1671(PF05935)ER
240015.ACP_1290(PF09286)ER
240015.ACP_0894(PF12704)(mitochondrial)
240015.ACP_2125(PF12704)mitochondrial
240015.ACP_0870PF13620ER
240015.ACP_3522PF13620(mitochondrial)
240015.ACP_1847PF13620ER
240015.ACP_1595PF13620(mitochondrial)
240015.ACP_1600(PF12704)mitochondrial
240015.ACP_0512PF04916ER
240015.ACP_0883(PF12704)mitochondrial
240015.ACP_2005(PF13506)ER
240015.ACP_0867PF13620ER
240015.ACP_3514(PF12704)mitochondrial
240015.ACP_2822(PF09286)mitochondrial
240015.ACP_1826PF13620ER
240015.ACP_0067PF13620ER
240015.ACP_1948(PF02012)(mitochondrial)
240015.ACP_3148(PF10282)(mitochondrial)
240015.ACP_0040PF13620(ER)
240015.ACP_2503(PF12704)(mitochondrial)
240015.ACP_0908(PF01229)plastid
240015.ACP_1522(PF12704)(mitochondrial)
240015.ACP_2500(PF09286)(mitochondrial)
240015.ACP_1287PF13620(ER)
240015.ACP_2665(PF03662)(plastid)
240015.ACP_2237PF13620(mitochondrial)
240015.ACP_0519(PF07837) (PF02971)
240015.ACP_2007(PF12704)(mitochondrial)
240015.ACP_0853PF13620(plastid)
240015.ACP_1134PF13620
240015.ACP_1810(PF09286)
240015.ACP_0031(PF10282)
240015.ACP_1365PF13620
240015.ACP_0565(PF16670)
240015.ACP_3307(PF00154)
240015.ACP_2326(PF10013)
240015.ACP_0487(PF15902)
240015.ACP_2157PF13620
240015.ACP_0907(PF12704)
240015.ACP_0906(PF12704)
240015.ACP_3264PF02037
240015.ACP_0911(PF11721)
240015.ACP_2952(PF10282)
240015.ACP_0435PF13620
240015.ACP_1526(PF12704)
240015.ACP_1527(PF12704)
240015.ACP_1397(PF12704)
240015.ACP_3240(PF02171)
240015.ACP_1890(PF00643)
240015.ACP_2934PF13620
240015.ACP_1919PF13620
240015.ACP_1701(PF12704)
240015.ACP_0877PF13620
240015.ACP_0872(PF12704)
240015.ACP_1901(PF10282)
240015.ACP_0261PF09810
240015.ACP_2006(PF12704)
240015.ACP_2648(PF12704)
240015.ACP_3199(PF00154)
240015.ACP_0868(PF11721)
240015.ACP_2732PF13620
240015.ACP_1853(PF12704)
240015.ACP_1582(PF11397)
240015.ACP_1860PF13620
240015.ACP_0190PF13620

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================