Effective results for Erythrobacter sp. NAP1 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 27 proteins (0 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
237727.NAP1_09897				(PF04784)	ER
237727.NAP1_09887				(PF04784)	ER
237727.NAP1_09892				(PF04784)	ER
237727.NAP1_05220				(PF03073)	ER
237727.NAP1_07785				(PF08840)	ER
237727.NAP1_09352				(PF03073)	ER
237727.NAP1_09902				(PF04784)	ER
237727.NAP1_05860				(PF06455)	ER
237727.NAP1_09362				(PF03209)	(ER)
237727.NAP1_01620				(PF14108)	ER
237727.NAP1_07055				(PF08840)	(ER)
237727.NAP1_07580				(PF03073)	(ER)
237727.NAP1_15318				(PF14108)	(ER)
237727.NAP1_14568				(PF04325)
237727.NAP1_04465				(PF13759)
237727.NAP1_00600				(PF13661)
237727.NAP1_00595				(PF13759)
237727.NAP1_00055				(PF04325)
237727.NAP1_09412				(PF03209)
237727.NAP1_04765				(PF05019)
237727.NAP1_08297				(PF10013)	not used
237727.NAP1_11818				(PF02933)
237727.NAP1_14538				(PF04325)
237727.NAP1_00060				(PF04325)	not used
237727.NAP1_08627				(PF01786)
237727.NAP1_04995				(PF11815)
237727.NAP1_04755				(PF05019)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================