Metamenu

Effective results for Geobacillus kaustophilus HTA426 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 21 proteins (3 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
235909.GK3291(PF08797)(mitochondrial)
235909.GK0161(PF13565)(ER)
235909.GK0349(PF13565)(ER)
235909.GK1704(PF13565)(ER)
235909.GK0316PF01576(mitochondrial)
235909.GK2367(PF08797)(ER)
235909.GK0515(PF08761)
235909.GK1916(PF13565)
235909.GK2862(PF12606)
235909.GK1107(PF13921)
235909.GK2714(PF08761)
235909.GK1434PF05701
235909.GK3271(PF08950)
235909.GK0880(PF13565)
235909.GK3042(PF12638)not used
235909.GK3069(PF05225)
235909.GK2911(PF13565)
235909.GK3413(PF13921)
235909.GK3312PF08961
235909.GK0780(PF13565)
235909.GK3264(PF08950)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================