Effective results for Chlamydophila caviae GPIC (eggnog40)

Summary

Number of putative secreted proteins: 186
- Predicted by EffectiveT3: 69 (high confidence), 69 (low confidence)
- Predicted by EffectiveCCBD: 14 within, 6 before, 12 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 28 proteins (14 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
227941.CCA00277+PF02415 (PF03797)(ER); ER
227941.CCA00271(>)PF02415 (PF03797)ER
227941.CCA00743(>)(PF08123)(mitochondrial)
227941.CCA00274PF02415 (PF03797)ER
227941.CCA00272PF02415 (PF03797)(ER)
227941.CCA00278PF02415 (PF03797)ER; mitochondrial
227941.CCA00279PF02415 (PF03797)(ER)
227941.CCA00284(+)PF02415 (PF03797)ER; (ER)
227941.CCA00283PF02415 (PF03797)ER
227941.CCA00282PF02415 (PF03797)ER
227941.CCA00806PF02415 (PF03797)mitochondrial
227941.CCA00205PF02415 (PF03797)ER
227941.CCA00206PF02415 (PF03797)ER
227941.CCA00624+(PF03797)ER
227941.CCA00315+(ER)
227941.CCA00312+ER
227941.CCA00275(PF03797)ER; (ER)
227941.CCA00273(PF03797)ER
227941.CCA00394(>)ER
227941.CCA00040(<)(mitochondrial)
227941.CCA00300(<)ER
227941.CCA00626+ER
227941.CCA00281(PF03797)ER
227941.CCA00493+ER
227941.CCA00006+(ER)
227941.CCA00118+mitochondrial
227941.CCA00793+(mitochondrial); (plastid)
227941.CCA00718+(PF02902)plastid
227941.CCA00658+mitochondrial; (mitochondrial)
227941.CCA00717+ER
227941.CCA00578(>)(ER)
227941.CCA00964(>)ER
227941.CCA00965(<)ER
227941.CCA00261+PF10275
227941.CCA00360+plastid
227941.CCA00318+(plastid)
227941.CCA00708+(plastid)
227941.CCA00700+(plastid)
227941.CCA00558+(plastid)
227941.CCA00696+(mitochondrial)
227941.CCA00245++
227941.CCA00339+plastid
227941.CCA00876(+)mitochondrial
227941.CCA00755+(plastid)
227941.CCA00723+(plastid)
227941.CCA00616+(>)
227941.CCA00378(+)(mitochondrial)
227941.CCA00605(+)(mitochondrial)
227941.CCA00180(+)(PF05677)(plastid)
227941.CCA00188+(ER)
227941.CCA00841+(mitochondrial); not used
227941.CCA00158+(mitochondrial)
227941.CCA00430+plastid
227941.CCA00819(<)
227941.CCA00740(PF07720)
227941.CCA00124+
227941.CCA00563+
227941.CCA00496+
227941.CCA00636(+)(plastid)
227941.CCA00858+
227941.CCA00221+
227941.CCA00741+
227941.CCA00742+
227941.CCA00707+
227941.CCA00032+
227941.CCA00030+
227941.CCA00341+
227941.CCA00353(>)
227941.CCA00955+
227941.CCA00954+
227941.CCA00952(PF07720)
227941.CCA00775(<)
227941.CCA00983+
227941.CCA00576+
227941.CCA00073+
227941.CCA00170+
227941.CCA00689(>)
227941.CCA00523+
227941.CCA00398+
227941.CCA00550+
227941.CCA00556(+)(mitochondrial)
227941.CCA00062+
227941.CCA00304+
227941.CCA00307+
227941.CCA00303(+)(mitochondrial)
227941.CCA00905+
227941.CCA00625+
227941.CCA00156+
227941.CCA00622+
227941.CCA00153+
227941.CCA00233(+)PF07651
227941.CCA00739+
227941.CCA00756+
227941.CCA00514+
227941.CCA00126(PF03219)
227941.CCA00838+
227941.CCA00930+
227941.CCA00164(+)(PF02201)
227941.CCA00645+
227941.CCA00648(PF09825)
227941.CCA00385+
227941.CCA00429+
227941.CCA00425+
227941.CCA00424+
227941.CCA00426+
227941.CCA00988(PF02201)
227941.CCA00984+
227941.CCA00490+
227941.CCA00007+
227941.CCA00535(+)plastid
227941.CCA00338+
227941.CCA00331+
227941.CCA00333(>)
227941.CCA00334+
227941.CCA00337(+)plastid
227941.CCA00500+
227941.CCA00538(+)(plastid)
227941.CCA00298+
227941.CCA00805+
227941.CCA00114(>)
227941.CCA00290+
227941.CCA00666(>)
227941.CCA00157+
227941.CCA00250+
227941.CCA00911+
227941.CCA00797+
227941.CCA00434(>)
227941.CCA00435(PF03219)
227941.CCA00795+
227941.CCA00325(+)(mitochondrial)
227941.CCA00961(<)
227941.CCA00814(+)
227941.CCA00179(+)
227941.CCA00667(+)
227941.CCA00368(+)
227941.CCA00361(+)
227941.CCA00147(+)
227941.CCA00856(+)
227941.CCA00916(+)
227941.CCA00145(+)
227941.CCA00335(+)
227941.CCA00701(+)
227941.CCA00702(+)
227941.CCA00037(+)
227941.CCA00139(+)
227941.CCA00456(+)
227941.CCA00451(+)
227941.CCA00772(+)
227941.CCA00397(+)
227941.CCA00416(+)
227941.CCA00063(+)
227941.CCA00914(+)
227941.CCA00152(+)
227941.CCA00012(+)
227941.CCA00609(+)
227941.CCA00235(+)
227941.CCA00629(+)
227941.CCA00757(+)
227941.CCA00513(+)
227941.CCA00929(+)
227941.CCA00951(+)
227941.CCA00242(+)
227941.CCA00408(+)
227941.CCA00941(+)
227941.CCA00546(+)
227941.CCA00549(+)
227941.CCA00494(+)
227941.CCA00871(+)
227941.CCA00003(+)
227941.CCA00803(+)
227941.CCA00725(+)
227941.CCA00050(+)
227941.CCA00052+
227941.CCA00297(+)
227941.CCA00230(+)
227941.CCA00608(+)
227941.CCA00845(+)
227941.CCA00851(+)
227941.CCA00329(+)
227941.CCA00438(+)
227941.CCA00537(+)
227941.CCA00536(+)
227941.CCA00883(+)
227941.CCA00016(+)
227941.CCA00889(+)
227941.CCA00017(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================