Metamenu

Effective results for Lactobacillus plantarum WCFS1 (eggnog40)

Summary

Number of putative secreted proteins: 128
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 128 proteins (0 high, 128 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
220668.lp_0353(PF00413)ER; (ER)
220668.lp_0681(PF01183)ER
220668.lp_2911(PF02517)ER
220668.lp_3405(PF12821)ER
220668.lp_0028(PF03632) (PF03636) (PF03633)
220668.lp_0800(PF03382)mitochondrial
220668.lp_2401(PF01183)ER
220668.lp_2796(PF03382)mitochondrial
220668.lp_2531(PF00367)(ER)
220668.lp_3117(PF03382)ER
220668.lp_3436(PF00230)ER
220668.lp_2349(PF00056) (PF02866)(ER)
220668.lp_0919(PF02517)ER
220668.lp_1730(PF03632) (PF03636) (PF03633)
220668.lp_0108(PF00230)ER; (ER)
220668.lp_1214(PF13518)(mitochondrial)
220668.lp_2988(PF00413)ER
220668.lp_3168(PF13518)mitochondrial
220668.lp_1158(PF01183)mitochondrial
220668.lp_0726(PF02517)ER
220668.lp_2969(PF00367)mitochondrial
220668.lp_3493(PF01487)(mitochondrial)
220668.lp_2810(PF01183)ER
220668.lp_0600(PF00413)ER
220668.lp_0426(PF02517)ER
220668.lp_0429(PF02517)ER
220668.lp_0428(PF02517)ER
220668.lp_1175(PF00230)ER
220668.lp_3043(PF00413)mitochondrial
220668.lp_0419(PF02517)ER
220668.lp_0412(PF02517)ER
220668.lp_1767(PF01183)ER
220668.lp_0300(PF02517)ER
220668.lp_0301(PF02517)ER
220668.lp_3530(PF03632) (PF03636) (PF03633)
220668.lp_0181(PF03632) (PF03636) (PF03633)
220668.lp_3075(PF03382)ER
220668.lp_0171(PF00230)ER
220668.lp_0372(PF00230)ER
220668.lp_1359(PF02517)ER
220668.lp_0999(PF12821)ER
220668.lp_3463(PF00230)ER
220668.lp_3240(PF00367)mitochondrial
220668.lp_0350(PF00056) (PF02866)
220668.lp_0537(PF00056) (PF02866)
220668.lp_1245(PF00056) (PF02866)
220668.lp_2337(PF16193) (PF12002)
220668.lp_0182(PF03644)(ER)
220668.lp_1519(PF16193) (PF12002)
220668.lp_1194(PF13518)(mitochondrial)
220668.lp_1427(PF05014)plastid
220668.lp_1543(PF16193) (PF12002)
220668.lp_1101(PF00056) (PF02866)
220668.lp_0527(PF00988)
220668.lp_1012(PF02403)
220668.lp_2878(PF12464)
220668.lp_3093(PF01183)
220668.lp_1933(PF12464)
220668.lp_2913(PF08282)
220668.lp_0228(PF03577)
220668.lp_1064(PF01610)
220668.lp_0824(PF08282)
220668.lp_1463(PF01610)
220668.lp_2861(PF12464)
220668.lp_2787(PF08282)
220668.lp_3133(PF00367)
220668.lp_1783(PF00988)
220668.lp_2074(PF13518)
220668.lp_3308(PF01610)
220668.lp_3237(PF08282)
220668.lp_3120(PF06421)
220668.lp_2550(PF12464)
220668.lp_0338(PF05495)
220668.lp_0334(PF03577)
220668.lp_2759(PF08282)
220668.lp_0805(PF08282)
220668.lp_2795(PF03382)
220668.lp_2798(PF01487)
220668.lp_2572(PF02275)
220668.lp_1876(PF08282)
220668.lp_0475(PF08282)
220668.lp_0905(PF00367)
220668.lp_3219(PF00367)
220668.lp_0265(PF00367)
220668.lp_0264(PF00367)
220668.lp_0862(PF00847)
220668.lp_0675(PF01183)
220668.lp_0026(PF08282)
220668.lp_1213(PF13518)
220668.lp_1723(PF08282)
220668.lp_2164(PF01610)
220668.lp_0068(PF12821)
220668.lp_0067(PF02275)
220668.lp_1537(PF01610)
220668.lp_1711(PF03577)
220668.lp_3397(PF05014)
220668.lp_2761(PF12464)
220668.lp_2617(PF01610)
220668.lp_3362(PF02275)
220668.lp_3036(PF01610)
220668.lp_0138(PF05014)
220668.lp_0425(PF02517)
220668.lp_1177(PF05704)
220668.lp_0959(PF03577)
220668.lp_2601(PF08282)
220668.lp_3553(PF12464)
220668.lp_0961(PF13518)
220668.lp_2015(PF06421)
220668.lp_2010(PF13518)
220668.lp_2011(PF13518)
220668.lp_2701(PF00988)
220668.lp_0393(PF12464)
220668.lp_0397(PF08282)
220668.lp_0395(PF08282)
220668.lp_3229(PF00367)
220668.lp_1288(PF01610)
220668.lp_0886(PF00367)
220668.lp_2005(PF01610)
220668.lp_2007(PF01610)
220668.lp_3536(PF02275)
220668.lp_3537(PF08282)
220668.lp_0185(PF00367)
220668.lp_0501(PF02403)
220668.lp_3522(PF00367)
220668.lp_3527(PF00367)
220668.lp_1353(PF08282)
220668.lp_3513(PF00367)
220668.lp_2023(PF01610)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================