Metamenu

Effective results for Pectobacterium atrosepticum SCRI1043 (eggnog40)

Summary

Number of putative secreted proteins: 641
- Predicted by EffectiveT3: 241 (high confidence), 295 (low confidence)
- Predicted by EffectiveCCBD: 27 within, 17 before, 46 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 29 proteins (9 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
218491.ECA0804(PF14686) PF06045 (PF14683)ER
218491.ECA4043+ER
218491.ECA4067(PF00544)ER
218491.ECA4068(PF00544)ER
218491.ECA4069(PF00544)ER
218491.ECA2521(>)mitochondrial
218491.ECA0912+ER
218491.ECA0916(>)(mitochondrial)
218491.ECA3400PF01807 (PF13155) (PF08275)
218491.ECA2046+PF01644 (PF03142)
218491.ECA2280+mitochondrial
218491.ECA1342(>)ER
218491.ECA1343+ER
218491.ECA1400+(ER)
218491.ECA3364+ER
218491.ECA0758+(ER)
218491.ECA1977+ER
218491.ECA3594+(ER); (mitochondrial)
218491.ECA2403(>)ER
218491.ECA2373+ER
218491.ECA0717(>)ER
218491.ECA2276(<)ER
218491.ECA0815(>)ER
218491.ECA3674+ER
218491.ECA3112(PF00544)mitochondrial
218491.ECA3841+(mitochondrial)
218491.ECA0549(>)(ER)
218491.ECA4327+ER; (ER)
218491.ECA3061(<)ER
218491.ECA1229(<)(ER)
218491.ECA3096(>)ER
218491.ECA0681PF01807 (PF13155) (PF08275)
218491.ECA4167+ER
218491.ECA1817+ER; (ER)
218491.ECA0075(>)ER
218491.ECA1808+ER; (ER)
218491.ECA1276+(ER)
218491.ECA2751(>)(mitochondrial); mitochondrial
218491.ECA2577+ER
218491.ECA2427(>)ER
218491.ECA4412(>)ER
218491.ECA3602(>)ER
218491.ECA3162+ER
218491.ECA1707+mitochondrial
218491.ECA1446(>)ER
218491.ECA2941+mitochondrial
218491.ECA0091(>)(ER)
218491.ECA3390PF01807 (PF13155) (PF08275)
218491.ECA2116(>)ER
218491.ECA1094(PF03211)ER
218491.ECA0146(+)(mitochondrial)
218491.ECA4062+(>)
218491.ECA4465(+)mitochondrial
218491.ECA4282PF01807 (PF13155)
218491.ECA3407PF01807 (PF13155)
218491.ECA4291PF01807 (PF13155)
218491.ECA2187+(ER)
218491.ECA1570+(plastid)
218491.ECA2986+(PF03079)
218491.ECA0290+(ER)
218491.ECA4041(+)(ER); (plastid)
218491.ECA0580(+)ER
218491.ECA4359+(>)
218491.ECA2478(+)(ER)
218491.ECA3919+(mitochondrial)
218491.ECA2663+(plastid)
218491.ECA2898+(plastid)
218491.ECA3454(+)(mitochondrial); plastid
218491.ECA0251(<)(mitochondrial)
218491.ECA3077(+)(mitochondrial); plastid
218491.ECA4114+(plastid)
218491.ECA0865+(plastid)
218491.ECA1300(+)ER; (ER)
218491.ECA3064+(plastid)
218491.ECA3781+(plastid)
218491.ECA3097(+)(ER); (mitochondrial)
218491.ECA2784(+)(mitochondrial); (plastid)
218491.ECA3657(+)(ER)
218491.ECA0462+plastid
218491.ECA2220(+)ER
218491.ECA1499(PF00544)plastid
218491.ECA2237+(plastid)
218491.ECA3416PF01807 (PF13155)
218491.ECA2749(+)(ER)
218491.ECA0213+(plastid)
218491.ECA0992(+)mitochondrial
218491.ECA3331+(ER)
218491.ECA4215(>)(ER)
218491.ECA1878(+)ER
218491.ECA0998+(plastid)
218491.ECA1186+(plastid)
218491.ECA1729++
218491.ECA0059+(mitochondrial)
218491.ECA2817(<)(mitochondrial)
218491.ECA3612(+)mitochondrial; (mitochondrial)
218491.ECA1731+(plastid)
218491.ECA1189(>)(ER)
218491.ECA3518(+)mitochondrial; (mitochondrial)
218491.ECA2485(+)(mitochondrial); (plastid)
218491.ECA1925(+)(>)(mitochondrial)
218491.ECA2009(+)ER
218491.ECA0487+(plastid)
218491.ECA3949(+)(mitochondrial)
218491.ECA2010(+)(ER)
218491.ECA1717+plastid
218491.ECA0370+(ER)
218491.ECA2147+
218491.ECA2146+
218491.ECA2035(+)(ER)
218491.ECA2032(<)
218491.ECA3816(>)
218491.ECA0386+
218491.ECA0388(>)
218491.ECA1555+
218491.ECA1551+
218491.ECA3540+
218491.ECA1087+
218491.ECA1086(>)
218491.ECA0565+
218491.ECA1175+
218491.ECA4283+
218491.ECA2526(PF04399)
218491.ECA1957+
218491.ECA3158+
218491.ECA0606+
218491.ECA0604+
218491.ECA1775+
218491.ECA2283+
218491.ECA3805(<)
218491.ECA3804+
218491.ECA2997+
218491.ECA0446+
218491.ECA1850(>)
218491.ECA4478(+)(>)
218491.ECA0596+
218491.ECA3485(+)(PF03079)
218491.ECA0352+
218491.ECA1349+
218491.ECA1341+
218491.ECA2607+
218491.ECA4293(>)
218491.ECA4292+
218491.ECA0769+
218491.ECA0586+not used
218491.ECA3120+
218491.ECA2462+
218491.ECA4237+
218491.ECA3165+
218491.ECA3237(>)
218491.ECA3230+
218491.ECA0907+
218491.ECA1749+
218491.ECA3830+
218491.ECA3836+
218491.ECA0833(+)mitochondrial; not used
218491.ECA0983(<)
218491.ECA1403+
218491.ECA1407+
218491.ECA2181+
218491.ECA1571+
218491.ECA2878+
218491.ECA2872+
218491.ECA2853+
218491.ECA1197+
218491.ECA3280(>)
218491.ECA2611+
218491.ECA0064+
218491.ECA4136+
218491.ECA3580+
218491.ECA3581+
218491.ECA1397+
218491.ECA0757+
218491.ECA2501+
218491.ECA3056(+)(mitochondrial)
218491.ECA1971+
218491.ECA3138+
218491.ECA3227+
218491.ECA3223+
218491.ECA0935(>)
218491.ECA0937+
218491.ECA1752+
218491.ECA2260+
218491.ECA1680+
218491.ECA0800+
218491.ECA2225A+not used
218491.ECA2506+
218491.ECA2083+
218491.ECA2081+
218491.ECA4052+
218491.ECA1215+
218491.ECA0334(+)(plastid)
218491.ECA4121(>)
218491.ECA3597+
218491.ECA0242+
218491.ECA0746+
218491.ECA0745+
218491.ECA0749(+)(>)
218491.ECA3041+
218491.ECA1704+
218491.ECA0984+
218491.ECA3795+
218491.ECA1695+
218491.ECA3211(PF16485)
218491.ECA2310+
218491.ECA2573+
218491.ECA2073(>)
218491.ECA2075+
218491.ECA2271+
218491.ECA0813+
218491.ECA2719+
218491.ECA1519(>)
218491.ECA1123(>)
218491.ECA2096+
218491.ECA2090+
218491.ECA2092+not used
218491.ECA0035+
218491.ECA1205+
218491.ECA2894+
218491.ECA2897+
218491.ECA2896+
218491.ECA1903+
218491.ECA3695+
218491.ECA3453+not used
218491.ECA0323+
218491.ECA1331(<)not used
218491.ECA1909+
218491.ECA0255+
218491.ECA3078+
218491.ECA2937+
218491.ECA0481+
218491.ECA1681(+)mitochondrial
218491.ECA2305(+)+
218491.ECA2306+
218491.ECA0799+
218491.ECA3849+
218491.ECA2106(PF09994)
218491.ECA2938+
218491.ECA1239+
218491.ECA4498(>)
218491.ECA0479+
218491.ECA4146(PF09994)
218491.ECA3508+
218491.ECA3062+
218491.ECA3660+
218491.ECA4405+
218491.ECA2428(+)(PF16387)
218491.ECA1833(<)
218491.ECA0783+
218491.ECA3242+
218491.ECA1650(>)
218491.ECA0055(+)(plastid)
218491.ECA2811+
218491.ECA3470+
218491.ECA3479(PF09994)
218491.ECA0305+
218491.ECA2652+
218491.ECA2657+
218491.ECA3783+
218491.ECA3784+
218491.ECA3092+
218491.ECA2787+
218491.ECA0668+
218491.ECA0467+
218491.ECA0463(+)(mitochondrial)
218491.ECA3262+
218491.ECA3888+
218491.ECA3932+
218491.ECA1641(<)not used
218491.ECA2393+
218491.ECA2916+
218491.ECA1258+
218491.ECA1495(+)(plastid)
218491.ECA1088(+)+
218491.ECA3463(>)
218491.ECA4513(<)
218491.ECA0711(<)
218491.ECA3640(+)(ER)
218491.ECA4226+
218491.ECA0672(PF13155)
218491.ECA0671+
218491.ECA0676+
218491.ECA0232+
218491.ECA2356(>)
218491.ECA2236+
218491.ECA2124+
218491.ECA2121+
218491.ECA0079+
218491.ECA1488+
218491.ECA1483+
218491.ECA2900+
218491.ECA4190+
218491.ECA0586A+not used
218491.ECA0212+
218491.ECA1066+
218491.ECA0503(+)(mitochondrial)
218491.ECA2694+
218491.ECA3742+
218491.ECA0997(>)
218491.ECA2343+
218491.ECA2345+
218491.ECA2621+
218491.ECA2112(+)(PF03211)
218491.ECA2972+
218491.ECA2971+
218491.ECA2111+
218491.ECA1474(+)(mitochondrial)
218491.ECA0545A+not used
218491.ECA1584(PF10013)not used
218491.ECA1905(+)(plastid)
218491.ECA4181+
218491.ECA0225+
218491.ECA2753+
218491.ECA3627+
218491.ECA0534(<)
218491.ECA2378+
218491.ECA3981+
218491.ECA3988+
218491.ECA3968(+)(plastid)
218491.ECA3961+
218491.ECA1724+
218491.ECA1721+
218491.ECA2964+
218491.ECA4356(PF09994)
218491.ECA2915+
218491.ECA1598(>)
218491.ECA3503+
218491.ECA0015+
218491.ECA0524+
218491.ECA3767+
218491.ECA0506+
218491.ECA1862+
218491.ECA2368+
218491.ECA0522+
218491.ECA2806+
218491.ECA2561+
218491.ECA3372(+)(mitochondrial)
218491.ECA3355+
218491.ECA3356+
218491.ECA2804+
218491.ECA3440+
218491.ECA3197+
218491.ECA1600+
218491.ECA1603+
218491.ECA0956(>)
218491.ECA0951+
218491.ECA2002+
218491.ECA1456+
218491.ECA4431(PF09994)
218491.ECA0445+
218491.ECA2958+
218491.ECA4314+
218491.ECA3601(>)
218491.ECA0554+
218491.ECA1141+
218491.ECA2487(+)plastid
218491.ECA2931+
218491.ECA1733(>)
218491.ECA1635+
218491.ECA1636+
218491.ECA3941+
218491.ECA3943+
218491.ECA1703(+)(plastid)
218491.ECA3381(<)
218491.ECA4407+
218491.ECA2947+
218491.ECA4086+
218491.ECA0095(<)
218491.ECA0545+not used
218491.ECA4392+
218491.ECA3707+
218491.ECA3014+
218491.ECA1937+
218491.ECA3377(PF04399)
218491.ECA2154+
218491.ECA2152+
218491.ECA3954+
218491.ECA1712+
218491.ECA1711+
218491.ECA1710+
218491.ECA3399+
218491.ECA4352+
218491.ECA4508(>)
218491.ECA0396+
218491.ECA2847+
218491.ECA3990+
218491.ECA2293+
218491.ECA2297(>)
218491.ECA4254(+)plastid
218491.ECA3499+
218491.ECA4413+
218491.ECA2710(+)(ER)
218491.ECA0528+
218491.ECA2627+
218491.ECA0414(+)plastid
218491.ECA1941(+)
218491.ECA2141(+)
218491.ECA0963(+)
218491.ECA0960(+)
218491.ECA2030(+)
218491.ECA1764(+)
218491.ECA3812(+)
218491.ECA0380(+)
218491.ECA0387(+)
218491.ECA1556(+)
218491.ECA3541(+)
218491.ECA4263(+)
218491.ECA2708(+)
218491.ECA2702(+)
218491.ECA4289(+)
218491.ECA4287(+)
218491.ECA4280(+)
218491.ECA2522(+)
218491.ECA3318(+)
218491.ECA0918(+)
218491.ECA4364(+)
218491.ECA3406(+)
218491.ECA0824(+)
218491.ECA2023(+)
218491.ECA1411(+)
218491.ECA3671(+)
218491.ECA0176(+)
218491.ECA2992(+)
218491.ECA0280(+)
218491.ECA0286(+)
218491.ECA4074(+)
218491.ECA4072(+)
218491.ECA2865(+)
218491.ECA2866(+)
218491.ECA0594(+)
218491.ECA3735(+)
218491.ECA4296(+)
218491.ECA3010(+)
218491.ECA2512(+)
218491.ECA3026(+)
218491.ECA3025(+)
218491.ECA1967(+)
218491.ECA0900(+)
218491.ECA0902(+)
218491.ECA1747(+)
218491.ECA2056(+)
218491.ECA2292(+)
218491.ECA3838(+)
218491.ECA1404(+)
218491.ECA3904(+)
218491.ECA2723(+)
218491.ECA0585(+)
218491.ECA0581(+)
218491.ECA0061(+)
218491.ECA2502(+)
218491.ECA3055(+)
218491.ECA1857(+)
218491.ECA3135(+)
218491.ECA1639(+)
218491.ECA1132(+)
218491.ECA1753(+)
218491.ECA2263(+)
218491.ECA1990(+)
218491.ECA3547(+)
218491.ECA3918(+)
218491.ECA0022(+)
218491.ECA1324(+)
218491.ECA2662(+)
218491.ECA4162(+)
218491.ECA3793(+)
218491.ECA1692(+)
218491.ECA3210(+)
218491.ECA2312(+)
218491.ECA3852(+)
218491.ECA0814(+)
218491.ECA3491(+)
218491.ECA0100(+)
218491.ECA0107(+)
218491.ECA4025(+)
218491.ECA0327(+)
218491.ECA1330(+)
218491.ECA1336(+)
218491.ECA2672(+)
218491.ECA4153(+)
218491.ECA1029(+)
218491.ECA3672(+)
218491.ECA3113(+)
218491.ECA3119(+)
218491.ECA2308(+)
218491.ECA0792(+)
218491.ECA4350(+)
218491.ECA2068(+)
218491.ECA2939(+)
218491.ECA4034(+)
218491.ECA3562(+)
218491.ECA3505(+)
218491.ECA2529(+)
218491.ECA4147(+)
218491.ECA0494(+)
218491.ECA2332(+)
218491.ECA3308(+)
218491.ECA2458(+)
218491.ECA1658(+)
218491.ECA0125(+)
218491.ECA0129(+)
218491.ECA1530(+)
218491.ECA1535(+)
218491.ECA4006(+)
218491.ECA2927(+)
218491.ECA1220(+)
218491.ECA1313(+)
218491.ECA0626(+)
218491.ECA2654(+)
218491.ECA0859(+)
218491.ECA0669(+)
218491.ECA0465(+)
218491.ECA0853(+)
218491.ECA0688(+)
218491.ECA1611(+)
218491.ECA1593(+)
218491.ECA3467(+)
218491.ECA4300(+)
218491.ECA3799(+)
218491.ECA3578(+)
218491.ECA1078(+)
218491.ECA1079(+)
218491.ECA4304(+)
218491.ECA1100(+)
218491.ECA3477(+)
218491.ECA3341(+)
218491.ECA4420(+)
218491.ECA4214(+)
218491.ECA3321(+)
218491.ECA3329(+)
218491.ECA0697(+)
218491.ECA3575(+)
218491.ECA2126(+)
218491.ECA2122(+)
218491.ECA1677(+)
218491.ECA1290(+)
218491.ECA2901(+)
218491.ECA1482(+)
218491.ECA2906(+)
218491.ECA3415(+)
218491.ECA3524(+)
218491.ECA1062(+)
218491.ECA4472(+)
218491.ECA2697(+)
218491.ECA0444(+)
218491.ECA3874(+)
218491.ECA2202(+)
218491.ECA3336(+)
218491.ECA4273(+)
218491.ECA3550(+)
218491.ECA2113(+)
218491.ECA4374(+)
218491.ECA2975(+)
218491.ECA2979(+)
218491.ECA3403(+)
218491.ECA1589(+)
218491.ECA2597(+)
218491.ECA2755(+)
218491.ECA4473(+)
218491.ECA4474(+)
218491.ECA0638(+)
218491.ECA2376(+)
218491.ECA2371(+)
218491.ECA3349(+)
218491.ECA3982(+)
218491.ECA1726(+)
218491.ECA1727(+)
218491.ECA1464(+)
218491.ECA1467(+)
218491.ECA1461(+)
218491.ECA1460(+)
218491.ECA1468(+)
218491.ECA4518(+)
218491.ECA4514(+)
218491.ECA3506(+)
218491.ECA0233(+)
218491.ECA3509(+)
218491.ECA0234(+)
218491.ECA0886(+)
218491.ECA0921(+)
218491.ECA2583(+)
218491.ECA0498(+)
218491.ECA3616(+)
218491.ECA2921(+)
218491.ECA3768(+)
218491.ECA3763(+)
218491.ECA2566(+)
218491.ECA2562(+)
218491.ECA1915(+)
218491.ECA2802(+)
218491.ECA2176(+)
218491.ECA0959(+)
218491.ECA0957(+)
218491.ECA3979(+)
218491.ECA3579(+)
218491.ECA4250(+)
218491.ECA2826(+)
218491.ECA4257(+)
218491.ECA3289(+)
218491.ECA3517(+)
218491.ECA3478(+)
218491.ECA0082(+)
218491.ECA4275(+)
218491.ECA3607(+)
218491.ECA1140(+)
218491.ECA2488(+)
218491.ECA1859(+)
218491.ECA3166(+)
218491.ECA3422(+)
218491.ECA3535(+)
218491.ECA1700(+)
218491.ECA1706(+)
218491.ECA3389(+)
218491.ECA3382(+)
218491.ECA4381(+)
218491.ECA0379(+)
218491.ECA2835(+)
218491.ECA4380(+)
218491.ECA1156(+)
218491.ECA3330(+)
218491.ECA2496(+)
218491.ECA1842(+)
218491.ECA3428(+)
218491.ECA3371(+)
218491.ECA3038(+)
218491.ECA1624(+)
218491.ECA0973(+)
218491.ECA0976(+)
218491.ECA1208(+)
218491.ECA1743(+)
218491.ECA1380(+)
218491.ECA1388(+)
218491.ECA1547(+)
218491.ECA1548(+)
218491.ECA1987(+)
218491.ECA4259(+)
218491.ECA1090(+)
218491.ECA1096(+)
218491.ECA3995(+)
218491.ECA1364(+)
218491.ECA1361(+)
218491.ECA2628(+)
218491.ECA3000(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.2 (12/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================