Metamenu

Effective results for Carnobacterium sp. 17-4 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 13 proteins (0 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
208596.CAR_c02300(PF14249)(mitochondrial)
208596.CAR_c20460(PF07247)(mitochondrial)
208596.CAR_c16770(PF06941)
208596.CAR_c16100(PF01501)
208596.CAR_c18140(PF01501)
208596.CAR_c19000(PF01501)
208596.CAR_c21770(PF06941)
208596.CAR_c19010(PF01501)
208596.CAR_c24890(PF02403)
208596.CAR_c23130(PF00834)
208596.CAR_c21510(PF02403)
208596.CAR_c14930(PF00834)
208596.CAR_c09800(PF00834)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================