Effective results for Ehrlichia chaffeensis str. Arkansas (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 52
- Predicted by EffectiveELD: 1 eukaryotic-like domains, contained in 1 proteins (0 high, 1 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
205920.ECH_0916			+		mitochondrial
205920.ECH_0716			+		ER
205920.ECH_0862			+		mitochondrial
205920.ECH_0243			+		ER
205920.ECH_0396			+		ER
205920.ECH_0497			+		ER
205920.ECH_0181			+		(ER); plastid
205920.ECH_0043			+		ER
205920.ECH_1126			+		ER
205920.ECH_0825			+		mitochondrial
205920.ECH_0554				(PF06455)	ER
205920.ECH_0635			+		ER
205920.ECH_0040			+		ER
205920.ECH_0726			+		(mitochondrial)
205920.ECH_0232			+		ER
205920.ECH_0014			+		plastid
205920.ECH_1153			+		(mitochondrial)
205920.ECH_0142			+		(plastid)
205920.ECH_0285			+		(mitochondrial)
205920.ECH_0663			+
205920.ECH_1010			+
205920.ECH_0763			+
205920.ECH_0235			+
205920.ECH_0539			+
205920.ECH_0312			+
205920.ECH_0301			+
205920.ECH_0002			+
205920.ECH_0203			+
205920.ECH_0158			+
205920.ECH_0159			+
205920.ECH_0259			+
205920.ECH_0528			+
205920.ECH_0311			+
205920.ECH_0865			+
205920.ECH_0607			+
205920.ECH_0252			+
205920.ECH_0485			+
205920.ECH_0877			+
205920.ECH_0255			+
205920.ECH_0253			+
205920.ECH_0024			+
205920.ECH_0937			+
205920.ECH_0614			+
205920.ECH_0740			+
205920.ECH_0879			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 1.2 (12/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================