Metamenu

Effective results for Corynebacterium efficiens YS-314 (eggnog40)

Summary

Number of putative secreted proteins: 14
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 14 proteins (1 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
196164.HMPREF0290_1913(PF04760)(mitochondrial)
196164.HMPREF0290_1324(PF02224)
196164.HMPREF0290_1451(PF01195)
196164.HMPREF0290_1912(PF04760)
196164.HMPREF0290_2432(PF08354)
196164.HMPREF0290_1355(PF00454)
196164.HMPREF0290_0100(PF03803)
196164.HMPREF0290_1362(PF14249)
196164.HMPREF0290_2236(PF05495)
196164.HMPREF0290_2949PF08213not used
196164.HMPREF0290_1544(PF08354)
196164.HMPREF0290_2310(PF04760)
196164.HMPREF0290_1593(PF02224)
196164.HMPREF0290_1446(PF01195)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================