Effective results for Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (eggnog40)

Summary

Number of putative secreted proteins: 12
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 12 proteins (1 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
192222.Cj1432cPF16994(ER)
192222.Cj1126c(PF02516)ER
192222.Cj1152c(PF08645)mitochondrial
192222.Cj1137c(PF05704)
192222.Cj1141(PF03102)
192222.Cj1296(PF02522)
192222.Cj1297(PF02522)
192222.Cj1298(PF02522)
192222.Cj0945c(PF02689)
192222.Cj1599(PF08645)
192222.Cj1317(PF03102)
192222.Cj1327(PF03102)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.25 (2/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================