Metamenu

Effective results for Caulobacter crescentus CB15 (eggnog40)

Summary

Number of putative secreted proteins: 98
- Predicted by T4SEpre: 76
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 35 proteins (3 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
190650.CC_3072+mitochondrial
190650.CC_3071+ER
190650.CC_0199PF16190mitochondrial; (mitochondrial)
190650.CC_0181+ER
190650.CC_0574+ER
190650.CC_0889+ER
190650.CC_1023(PF00030)(ER)
190650.CC_2806(PF04820)ER
190650.CC_1790(PF08975)(mitochondrial)
190650.CC_3494+mitochondrial
190650.CC_2780+mitochondrial; plastid
190650.CC_3561+mitochondrial
190650.CC_2190+ER
190650.CC_2229(PF01963)mitochondrial
190650.CC_3348+(mitochondrial); plastid
190650.CC_0698(PF01963)ER
190650.CC_0697(PF01963)ER
190650.CC_0696(PF01963)mitochondrial
190650.CC_2139+ER
190650.CC_0866+ER
190650.CC_3615+mitochondrial; (mitochondrial)
190650.CC_1446+ER; (ER)
190650.CC_0877+ER
190650.CC_2734PF16190mitochondrial
190650.CC_3427PF04750ER
190650.CC_3704+mitochondrial
190650.CC_3701(PF01963)ER
190650.CC_2664+ER
190650.CC_3403+ER
190650.CC_1497+mitochondrial; (mitochondrial)
190650.CC_2044(PF11911)(ER)
190650.CC_3391+ER; (ER)
190650.CC_2917+ER; (ER)
190650.CC_0632(PF04577)mitochondrial
190650.CC_2021+(ER); (plastid)
190650.CC_1002(PF04820)(ER)
190650.CC_1005+(mitochondrial)
190650.CC_3547+(mitochondrial)
190650.CC_0792+(mitochondrial)
190650.CC_0212+(plastid)
190650.CC_3350+(mitochondrial)
190650.CC_3518+(mitochondrial)
190650.CC_1349+(mitochondrial)
190650.CC_1825+plastid
190650.CC_3180+
190650.CC_1139(PF10013)not used
190650.CC_2580+
190650.CC_2624+
190650.CC_0822+
190650.CC_3441+
190650.CC_2821(PF13661)
190650.CC_1755(PF04820)
190650.CC_2488(PF13661)
190650.CC_0972(PF04820)
190650.CC_0971(PF04820)
190650.CC_1024(PF00030)
190650.CC_0892(PF10067)
190650.CC_2498+
190650.CC_0366+
190650.CC_3551+
190650.CC_0787(PF04820)
190650.CC_2805(PF04820)
190650.CC_2807(PF04820)
190650.CC_2808(PF04820)
190650.CC_2978(PF11911)
190650.CC_0230+
190650.CC_2193+
190650.CC_0981+
190650.CC_3379+
190650.CC_2420+
190650.CC_1150+
190650.CC_0331(PF10067)
190650.CC_2692+
190650.CC_1529(PF04820)
190650.CC_3000+
190650.CC_3004+
190650.CC_3172(PF16387)
190650.CC_1455+
190650.CC_0074(PF09731)
190650.CC_1848(PF04577)
190650.CC_0876+
190650.CC_1878+
190650.CC_1877+
190650.CC_2081+
190650.CC_3312+
190650.CC_1271+
190650.CC_1814+
190650.CC_2478+
190650.CC_3716+
190650.CC_2288(PF04820)
190650.CC_1717+
190650.CC_1718+
190650.CC_2678+
190650.CC_1482+
190650.CC_0282+
190650.CC_0631(PF04577)
190650.CC_0296(PF10067)
190650.CC_1345+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.0 (10/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================