Metamenu

Effective results for Agrobacterium fabrum str. C58 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 68
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 29 proteins (1 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
176299.Atu1281(PF06455)ER
176299.Atu1263(PF13449)ER
176299.Atu0819(PF02082)mitochondrial
176299.Atu1813(PF02082)(ER)
176299.Atu3620(PF13449)(ER)
176299.Atu2052+ER
176299.Atu4299(PF02082)(ER)
176299.Atu0609+ER
176299.Atu1222+(mitochondrial)
176299.Atu2391+ER
176299.Atu4243+ER
176299.Atu2585(PF04488)mitochondrial
176299.Atu4472+mitochondrial
176299.Atu3663(PF02082)(ER)
176299.Atu3330+ER; (ER)
176299.Atu1381+ER; (ER)
176299.Atu4421+ER
176299.Atu1541+ER
176299.Atu1148(PF13449)ER
176299.Atu1233+(mitochondrial)
176299.Atu0692+ER
176299.Atu0212+(ER); ER
176299.Atu4489+ER
176299.Atu4028+mitochondrial
176299.Atu3438+(mitochondrial)
176299.Atu1802+(mitochondrial); mitochondrial
176299.Atu3423(PF02082)mitochondrial
176299.Atu2266(PF13449)ER
176299.Atu0878+(ER)
176299.Atu0291+(mitochondrial)
176299.Atu4215(PF00091)(mitochondrial)
176299.Atu0157+(mitochondrial)
176299.Atu4179+(mitochondrial)
176299.Atu1183PF14700 (PF00940)
176299.Atu4631+
176299.Atu4820(PF03479)
176299.Atu4739+
176299.Atu0254+
176299.Atu1924+
176299.Atu3625+
176299.Atu4059+
176299.Atu2655(PF09731)
176299.Atu2593+
176299.Atu2333+
176299.Atu4673(PF00091)
176299.Atu0770+
176299.Atu3987+
176299.Atu1103+
176299.Atu1036+
176299.Atu1695+
176299.Atu1348(PF01442)
176299.Atu0163+
176299.Atu3668(PF02082)
176299.Atu2623+
176299.Atu3208+
176299.Atu0370+
176299.Atu0571+
176299.Atu3833+
176299.Atu2001+
176299.Atu1788+
176299.Atu1050+
176299.Atu4200+
176299.Atu3783+
176299.Atu0237(PF02082)
176299.Atu0122+
176299.Atu3025(PF16332)
176299.Atu3363+
176299.Atu4106+
176299.Atu2510+
176299.Atu0842(PF04488)
176299.Atu0201(PF02082)
176299.Atu0111(PF08975)
176299.Atu0687+
176299.Atu4171+
176299.Atu0329+
176299.Atu1754+
176299.Atu3666(PF02082)
176299.Atu4572(PF16387)
176299.Atu1843+
176299.Atu1294+
176299.Atu4141(PF03479)
176299.Atu0493(PF02082)
176299.Atu2086(PF00091)
176299.Atu1414+
176299.Atu4819(PF03479)
176299.Atu3453+
176299.Atu0860+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================