Metamenu

Effective results for Streptococcus pneumoniae R6 (eggnog40)

Summary

Number of putative secreted proteins: 116
- Predicted by T4SEpre: 100
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 36 proteins (3 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
171101.spr1707+ER
171101.spr0722+(mitochondrial)
171101.spr1129+(mitochondrial)
171101.spr0831+ER
171101.spr0440(PF03644)(mitochondrial)
171101.spr1858+ER
171101.spr0884+ER
171101.spr0083+(mitochondrial); ER
171101.spr0098PF09683(ER); (plastid)
171101.spr0313+(mitochondrial)
171101.spr1061+(ER)
171101.spr1828+(mitochondrial)
171101.spr0329+ER
171101.spr1975+ER
171101.spr0353+(mitochondrial); mitochondrial
171101.spr0002+mitochondrial; (mitochondrial)
171101.spr1553+(mitochondrial); (plastid)
171101.spr0907+ER
171101.spr0906+ER
171101.spr0766(PF01610)(mitochondrial)
171101.spr1163+ER
171101.spr0014+(mitochondrial)
171101.spr0581+mitochondrial; (mitochondrial)
171101.spr0716+(ER)
171101.spr1577+mitochondrial
171101.spr0147+ER
171101.spr1178+ER
171101.spr0600PF09683(mitochondrial)
171101.spr2039+(ER)
171101.spr0087+(mitochondrial)
171101.spr0247(PF03714)(mitochondrial)
171101.spr1871(PF01470)(mitochondrial)
171101.spr0314PF02916(mitochondrial)
171101.spr0132+(PF01610)
171101.spr1079(PF13359)(mitochondrial)
171101.spr1784+(mitochondrial)
171101.spr0759+(ER)
171101.spr0017(PF01610)(mitochondrial)
171101.spr1197(PF13359)(plastid)
171101.spr1947(PF13359)
171101.spr1510+
171101.spr1702(PF01610)
171101.spr1701(PF01610)
171101.spr0987(PF01610)
171101.spr1716(PF01610)
171101.spr2026+
171101.spr1008(PF01610)
171101.spr0994(PF13359)
171101.spr0840+
171101.spr0841(PF13359)
171101.spr1225(PF04991)
171101.spr0932+
171101.spr1837+
171101.spr1721(PF01610)
171101.spr1035+
171101.spr0675+
171101.spr0948+
171101.spr0271+
171101.spr0986(PF01610)
171101.spr0332+
171101.spr1281+
171101.spr1025(PF03714)
171101.spr1021+
171101.spr1207+
171101.spr1056+
171101.spr1695+
171101.spr1872(PF01470)
171101.spr1308+
171101.spr1912+
171101.spr0310+
171101.spr0796+
171101.spr1842+
171101.spr0133(PF01610)
171101.spr1676(PF01610)
171101.spr1412+
171101.spr1891(PF13359)
171101.spr0782+
171101.spr0868+
171101.spr1060+
171101.spr1798+
171101.spr1087+
171101.spr0208+
171101.spr1505+
171101.spr0912+
171101.spr0214+
171101.spr2046+
171101.spr1646(PF08975)
171101.spr1556+
171101.spr0177+
171101.spr1554+
171101.spr1745(PF13359)
171101.spr1542+
171101.spr0765(PF01610)not used
171101.spr0762(PF01470)
171101.spr1164+
171101.spr1625+
171101.spr1573(PF13359)
171101.spr1370+
171101.spr1374+
171101.spr1909+
171101.spr2019+
171101.spr0375+
171101.spr1813+
171101.spr0566+
171101.spr0493+
171101.spr0387+
171101.spr0039(PF13359)
171101.spr0711+
171101.spr1775+
171101.spr1803+
171101.spr0557+
171101.spr0735+
171101.spr1152(PF04991)
171101.spr1151(PF04991)
171101.spr0605+
171101.spr0041(PF01610)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================