Effective results for Listeria monocytogenes EGD-e (eggnog40)

Summary

Number of putative secreted proteins: 64
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 64 proteins (17 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
169963.lmo2085				(PF05738)	ER
169963.lmo0159				(PF05738)	ER
169963.lmo0157				(PF06777)	mitochondrial
169963.lmo2178				(PF05738)	ER
169963.lmo2776				(PF09683)	ER
169963.lmo2576				(PF05738)	ER
169963.lmo0264				PF12799	ER
169963.lmo0262				PF12799	ER
169963.lmo0263				PF12799	ER
169963.lmo1115				(PF05738)	ER
169963.lmo2015				(PF01074) (PF07748) (PF09261)
169963.lmo2014				(PF01074) (PF07748) (PF09261)
169963.lmo0409				PF12799	(ER)
169963.lmo0401				(PF01074) (PF07748) (PF09261)
169963.lmo2784				(PF00359)	ER; (ER)
169963.lmo1786				PF12799	ER
169963.lmo2470				PF12799	ER
169963.lmo1289				PF12799	(ER)
169963.lmo0801				PF12799	ER
169963.lmo0425				(PF00359)	(mitochondrial)
169963.lmo0429				(PF01074) (PF07748) (PF09261)
169963.lmo0333				PF12799	ER
169963.lmo0433				PF12799	ER
169963.lmo0434				PF12799	(ER); ER
169963.lmo2734				(PF01074) (PF07748)
169963.lmo0160				(PF05738)	(mitochondrial)
169963.lmo0357				(PF00359)
169963.lmo2733				(PF00359)
169963.lmo0345				(PF02502)
169963.lmo0765				(PF06824)
169963.lmo0398				(PF00359)
169963.lmo2099				(PF00359)
169963.lmo2098				(PF00359)
169963.lmo1973				(PF00359)
169963.lmo2668				(PF00359)
169963.lmo0735				PF00834
169963.lmo0736				(PF02502)
169963.lmo0499				PF00834
169963.lmo0498				(PF02502)
169963.lmo0630				(PF00359)
169963.lmo2742				(PF07653)
169963.lmo0297				(PF00359)
169963.lmo2137				(PF00359)
169963.lmo0863				(PF08950)
169963.lmo0503				(PF00359)
169963.lmo0501				(PF00359)
169963.lmo0505				PF00834
169963.lmo2013				(PF06824)
169963.lmo2651				(PF00359)
169963.lmo2652				(PF00359)
169963.lmo2659				PF00834
169963.lmo0873				(PF00359)
169963.lmo2335				(PF00359)
169963.lmo2797				(PF00359)
169963.lmo0402				(PF00359)
169963.lmo2667				(PF00359)
169963.lmo2661				PF00834
169963.lmo2662				(PF02502)
169963.lmo0631				(PF00359)
169963.lmo2674				(PF02502)
169963.lmo1818				PF00834
169963.lmo0426				(PF00359)
169963.lmo2276				(PF00847)
169963.lmo0918				(PF00359)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================