Effective results for Colwellia psychrerythraea 34H (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 55 proteins (2 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
167879.CPS_2646				(PF04450)	ER
167879.CPS_4627				(PF02225)	ER
167879.CPS_1892				(PF02239)	mitochondrial
167879.CPS_1891				(PF01094)	mitochondrial
167879.CPS_2654				(PF04450)	ER
167879.CPS_2134				(PF16187)	ER
167879.CPS_0989				(PF02390)	ER
167879.CPS_4223				(PF02239)	ER
167879.CPS_4220				(PF02239)	ER
167879.CPS_4229				(PF02239)	ER
167879.CPS_3367				(PF01625)	ER
167879.CPS_3091				(PF02225)	ER
167879.CPS_3335				(PF02225)	ER
167879.CPS_1694				(PF11852)	ER
167879.CPS_3909				(PF02225)	(ER)
167879.CPS_0751				(PF02225)	ER
167879.CPS_4562				PF00354	ER
167879.CPS_3833				(PF08732)	(plastid)
167879.CPS_0525				(PF13444)	(mitochondrial)
167879.CPS_0549				(PF00026)	(plastid)
167879.CPS_0753				(PF02225)	(ER)
167879.CPS_1416				(PF10544)	(mitochondrial)
167879.CPS_3721				(PF00332)	(mitochondrial)
167879.CPS_2390				(PF02685)
167879.CPS_4396				(PF13444)
167879.CPS_1278				PF06552
167879.CPS_0797				(PF13444)
167879.CPS_1297				(PF10544)
167879.CPS_3155				(PF16187)
167879.CPS_0982				(PF02685)
167879.CPS_1103				(PF02482)
167879.CPS_0524				(PF13444)
167879.CPS_0996				(PF11852)
167879.CPS_1006				(PF02390)
167879.CPS_4817				(PF01625)
167879.CPS_2175				(PF13127)
167879.CPS_3429				(PF02460)
167879.CPS_1639				(PF08695)
167879.CPS_3069				(PF01625)
167879.CPS_3068				(PF01625)
167879.CPS_2638				(PF01625)
167879.CPS_0976				(PF02685)
167879.CPS_1350				(PF02482)
167879.CPS_2842				(PF16011)
167879.CPS_2843				(PF03848)
167879.CPS_0247				(PF02685)
167879.CPS_4110				(PF13875)
167879.CPS_3710				(PF02685)
167879.CPS_2619				(PF03848)
167879.CPS_2871				(PF02225)
167879.CPS_4544				(PF02482)
167879.CPS_1535				(PF02482)
167879.CPS_0721				(PF00036)
167879.CPS_3720				(PF00332)
167879.CPS_4146				(PF02390)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================