Effective results for Streptococcus pyogenes M1 GAS (eggnog40)

Summary

Number of putative secreted proteins: 78
- Predicted by T4SEpre: 81
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 16 proteins (0 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
160490.SPy_2010				(PF06280)	(ER)
160490.SPy_0448			+		ER
160490.SPy_1625			+		mitochondrial
160490.SPy_0330			+		ER
160490.SPy_2025				(PF05257)	ER
160490.SPy_2203			+		(ER)
160490.SPy_0836			+		(mitochondrial)
160490.SPy_1801				(PF05257)	ER
160490.SPy_1972			+		(mitochondrial); (ER)
160490.SPy_0319			+		ER
160490.SPy_0031				(PF05257)	ER
160490.SPy_1780			+		(mitochondrial)
160490.SPy_1361			+		ER
160490.SPy_0019				(PF05257)	ER
160490.SPy_0003			+		mitochondrial; (mitochondrial)
160490.SPy_1401			+		ER
160490.SPy_1733			+		ER
160490.SPy_1390			+		ER
160490.SPy_1882			+		ER
160490.SPy_2066			+		ER
160490.SPy_2083				(PF02971) (PF07837)
160490.SPy_1830			+		(mitochondrial)
160490.SPy_1642			+		(plastid)
160490.SPy_0416				(PF06280)	(ER)
160490.SPy_0500			+		(mitochondrial)
160490.SPy_1844			+
160490.SPy_0867			+
160490.SPy_1932			+
160490.SPy_0078			+
160490.SPy_2130			+
160490.SPy_0694			+
160490.SPy_1034			+
160490.SPy_0985				(PF12949)
160490.SPy_0984			+
160490.SPy_1922				(PF02502)
160490.SPy_1923				(PF02502)
160490.SPy_2107			+
160490.SPy_2217			+
160490.SPy_2210			+
160490.SPy_1006			+
160490.SPy_0205				(PF05495)
160490.SPy_0926			+
160490.SPy_0050			+
160490.SPy_1630			+
160490.SPy_1010			+
160490.SPy_1484			+
160490.SPy_0953			+
160490.SPy_1971			+
160490.SPy_1571			+
160490.SPy_0147			+
160490.SPy_0815			+
160490.SPy_2093			+
160490.SPy_2099			+
160490.SPy_1514			+
160490.SPy_1697			+
160490.SPy_1239			+
160490.SPy_1438				(PF05257)
160490.SPy_0910			+
160490.SPy_0913			+
160490.SPy_1443			+
160490.SPy_1538			+
160490.SPy_1743			+
160490.SPy_1251			+
160490.SPy_1482			+
160490.SPy_1260			+
160490.SPy_1262			+
160490.SPy_0637				(PF02502)
160490.SPy_1657			+
160490.SPy_0703			+
160490.SPy_1895			+
160490.SPy_0710				(PF05257)
160490.SPy_1707				(PF02502)
160490.SPy_1708				(PF02502)
160490.SPy_0473			+
160490.SPy_0477			+
160490.SPy_1297			+
160490.SPy_0503			+
160490.SPy_1874			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================