Effective results for Sphaerochaeta pleomorpha str. Grapes (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 96 proteins (5 high, 91 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
158190.SpiGrapes_2405				(PF13343)	ER
158190.SpiGrapes_1067				(PF02608)	ER
158190.SpiGrapes_0721				(PF02608)	ER
158190.SpiGrapes_1454				(PF13343)	ER
158190.SpiGrapes_1822				(PF13343)	ER
158190.SpiGrapes_0935				(PF01970)	ER
158190.SpiGrapes_0027				(PF01970)	ER
158190.SpiGrapes_1501				(PF01970)	(ER)
158190.SpiGrapes_2537				(PF01055)	(ER)
158190.SpiGrapes_0070				PF03815	ER
158190.SpiGrapes_1419				(PF02608)	ER
158190.SpiGrapes_0257				(PF02608)	ER
158190.SpiGrapes_1986				(PF02608)	ER
158190.SpiGrapes_0069				PF03351	ER
158190.SpiGrapes_0539				(PF01970)	(ER)
158190.SpiGrapes_3054				(PF13343)	ER
158190.SpiGrapes_2009				(PF01970)	ER
158190.SpiGrapes_3193				(PF01970)	(ER); ER
158190.SpiGrapes_1350				(PF13343)	ER
158190.SpiGrapes_1354				(PF13343)	ER
158190.SpiGrapes_1778				(PF02608)	ER
158190.SpiGrapes_2674				(PF13343)	ER
158190.SpiGrapes_0167				(PF02608)	ER
158190.SpiGrapes_0579				(PF01055)	mitochondrial
158190.SpiGrapes_1399				(PF02608)	ER
158190.SpiGrapes_1715				(PF01970)	ER
158190.SpiGrapes_2947				(PF02608)	ER
158190.SpiGrapes_1966				(PF13343)	ER
158190.SpiGrapes_1821				(PF13343)	ER
158190.SpiGrapes_2559				(PF01970)	ER
158190.SpiGrapes_0014				(PF02608)	ER
158190.SpiGrapes_0139				(PF13343)	ER
158190.SpiGrapes_2182				(PF02844) (PF02843)
158190.SpiGrapes_1891				(PF01195)	(mitochondrial)
158190.SpiGrapes_2663				(PF02844) (PF02843)
158190.SpiGrapes_2750				PF03727 PF00349
158190.SpiGrapes_0631				(PF03266)	(plastid)
158190.SpiGrapes_0199				(PF14691)	(mitochondrial)
158190.SpiGrapes_3171				(PF01263)	(plastid)
158190.SpiGrapes_0921				(PF07478)
158190.SpiGrapes_0922				(PF07478)
158190.SpiGrapes_2372				(PF14249)
158190.SpiGrapes_0739				(PF01991)
158190.SpiGrapes_3133				(PF00162)
158190.SpiGrapes_3132				(PF09861)
158190.SpiGrapes_0736				(PF01813)
158190.SpiGrapes_3009				(PF01880)
158190.SpiGrapes_0200				(PF02906)
158190.SpiGrapes_2345				(PF01263)
158190.SpiGrapes_3121				(PF14691)
158190.SpiGrapes_1879				(PF03313)
158190.SpiGrapes_3011				(PF01008)
158190.SpiGrapes_2528				(PF01263)
158190.SpiGrapes_0918				(PF07478)
158190.SpiGrapes_2531				(PF01970)
158190.SpiGrapes_0076				(PF01880)
158190.SpiGrapes_0256				(PF01008)
158190.SpiGrapes_0241				(PF14512)
158190.SpiGrapes_1337				(PF14691)
158190.SpiGrapes_1685				(PF01055)
158190.SpiGrapes_3273				(PF01263)
158190.SpiGrapes_3279				(PF01008)
158190.SpiGrapes_2651				(PF01875)
158190.SpiGrapes_0343				(PF16886)
158190.SpiGrapes_0345				(PF01813)
158190.SpiGrapes_2479				(PF02906)
158190.SpiGrapes_0359				(PF00162)
158190.SpiGrapes_1599				(PF01263)
158190.SpiGrapes_3214				(PF07478)
158190.SpiGrapes_3087				(PF14691)
158190.SpiGrapes_3150				(PF14691)
158190.SpiGrapes_2668				(PF14691)
158190.SpiGrapes_0372				PF04184
158190.SpiGrapes_2285				(PF14512)
158190.SpiGrapes_1156				(PF03313)
158190.SpiGrapes_0738				(PF16886)
158190.SpiGrapes_3236				(PF01875)
158190.SpiGrapes_3097				(PF09861)
158190.SpiGrapes_0763				(PF16011)
158190.SpiGrapes_0147				(PF03313)
158190.SpiGrapes_0540				(PF09861)
158190.SpiGrapes_1706				(PF03313)
158190.SpiGrapes_0971				(PF01055)
158190.SpiGrapes_1820				(PF16314)
158190.SpiGrapes_1735				(PF03313)
158190.SpiGrapes_1601				(PF01055)
158190.SpiGrapes_2092				(PF02906)
158190.SpiGrapes_1546				(PF01055)
158190.SpiGrapes_2706				PF07647
158190.SpiGrapes_1726				(PF03313)
158190.SpiGrapes_2411				(PF01263)
158190.SpiGrapes_2089				(PF02906)
158190.SpiGrapes_2495				(PF02906)
158190.SpiGrapes_3024				(PF01263)
158190.SpiGrapes_3020				(PF01195)
158190.SpiGrapes_1449				(PF14330)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================