Metamenu

Effective results for Chlamydophila pneumoniae CWL029 (eggnog40)

Summary

Number of putative secreted proteins: 188
- Predicted by EffectiveT3: 72 (high confidence), 65 (low confidence)
- Predicted by EffectiveCCBD: 13 within, 4 before, 11 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 32 proteins (15 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
115713.CPn0445+(PF03797) PF02415ER
115713.CPn0447(PF03797) PF02415ER
115713.CPn0446(PF03797) PF02415ER
115713.CPn0539(PF03797) PF02415ER
115713.CPn0471(PF03797) PF02415ER
115713.CPn0540(PF03797) PF02415ER
115713.CPn0466(PF03797) PF02415ER
115713.CPn0454(PF03797) PF02415ER
115713.CPn0669(>)ER
115713.CPn0105(>)(mitochondrial); mitochondrial
115713.CPn0963(PF03797)mitochondrial
115713.CPn0965+ER
115713.CPn0444PF02415ER
115713.CPn0726+(mitochondrial)
115713.CPn0680+ER
115713.CPn0535+ER
115713.CPn0538+(ER)
115713.CPn0020+ER
115713.CPn0470(PF03797)ER; (ER)
115713.CPn1018(PF08123)mitochondrial
115713.CPn0013(PF03797)ER
115713.CPn0289+ER
115713.CPn0005(PF03797)ER
115713.CPn0590(>)ER
115713.CPn0451(PF03797)ER
115713.CPn0453(+)PF02415(mitochondrial)
115713.CPn0908(>)mitochondrial; (mitochondrial)
115713.CPn0257+(mitochondrial)
115713.CPn1045+ER
115713.CPn0614(PF03219)(ER)
115713.CPn0196(+)ER
115713.CPn0241+(plastid)
115713.CPn0131+(plastid)
115713.CPn0026+(>)
115713.CPn0929+PF05677
115713.CPn1054+plastid
115713.CPn1059+(mitochondrial)
115713.CPn0115+(mitochondrial)
115713.CPn0892(+)mitochondrial
115713.CPn1027+(plastid)
115713.CPn0372+(plastid)
115713.CPn0547+
115713.CPn0428(+)(ER)
115713.CPn0744(>)(mitochondrial)
115713.CPn0308+(plastid)
115713.CPn0128(PF09825)(mitochondrial)
115713.CPn0040(+)(mitochondrial)
115713.CPn0416(+)(mitochondrial)
115713.CPn0076+(mitochondrial)
115713.CPn0230+(plastid)
115713.CPn1031(+)(ER)
115713.CPn1039+(mitochondrial)
115713.CPn0147+(plastid)
115713.CPn1006+(plastid)
115713.CPn0666+
115713.CPn0064(+)(mitochondrial)
115713.CPn0069+
115713.CPn0811(+)(PF07720)
115713.CPn0150+
115713.CPn0966(<)
115713.CPn0443+
115713.CPn0440+
115713.CPn0727(+)(mitochondrial)
115713.CPn0683(+)plastid
115713.CPn0023(<)
115713.CPn0927PF05677
115713.CPn0796(+)(PF03797)
115713.CPn0795(PF03797)
115713.CPn0157+
115713.CPn0928(+)PF05677
115713.CPn0292+
115713.CPn0291+
115713.CPn0483PF10275
115713.CPn0481+
115713.CPn0712+
115713.CPn0577(+)(PF02201)
115713.CPn0474+
115713.CPn0773+
115713.CPn0051+
115713.CPn0053+
115713.CPn0809+
115713.CPn0808+
115713.CPn0802(<)
115713.CPn0371+
115713.CPn0370+
115713.CPn0878+
115713.CPn0043+
115713.CPn1068(+)(plastid)
115713.CPn0572+
115713.CPn0648(>)
115713.CPn0164+
115713.CPn0087(+)(ER)
115713.CPn0288(+)plastid
115713.CPn0286+
115713.CPn0859+
115713.CPn0225+
115713.CPn0585+
115713.CPn0588+
115713.CPn0467(PF03797)
115713.CPn0304+
115713.CPn1022+
115713.CPn1020+
115713.CPn1021(PF07720)
115713.CPn0514+
115713.CPn0409+
115713.CPn0704(+)(plastid)
115713.CPn0700+
115713.CPn0248+
115713.CPn0267(+)(plastid)
115713.CPn0266+
115713.CPn0268+
115713.CPn0439+
115713.CPn0176(PF01823)
115713.CPn0174+
115713.CPn0678+
115713.CPn0072+
115713.CPn0083(>)
115713.CPn0951+
115713.CPn0186+
115713.CPn0381+
115713.CPn0950(<)
115713.CPn0256+
115713.CPn0932+
115713.CPn0523+
115713.CPn0524+
115713.CPn0284+
115713.CPn0038+
115713.CPn0034+
115713.CPn0691(>)
115713.CPn1004+
115713.CPn0626(>)
115713.CPn0852+
115713.CPn0499+
115713.CPn0677+
115713.CPn0351(PF03219)
115713.CPn0357+
115713.CPn0354+
115713.CPn0211+
115713.CPn0215+
115713.CPn0562PF05677
115713.CPn0769(PF02201)
115713.CPn1040(+)(mitochondrial)
115713.CPn1041+
115713.CPn0662(+)
115713.CPn0682(+)
115713.CPn0410(+)
115713.CPn0362(+)
115713.CPn0368(+)
115713.CPn0974(+)
115713.CPn0432(+)
115713.CPn0424(+)
115713.CPn0025(+)
115713.CPn0920(+)
115713.CPn0200(+)
115713.CPn1051(+)
115713.CPn0050(+)
115713.CPn0894(+)
115713.CPn0897(+)
115713.CPn0388(+)
115713.CPn0422(+)
115713.CPn1062(+)
115713.CPn1063(+)
115713.CPn0369(+)
115713.CPn0367(+)
115713.CPn0930(+)
115713.CPn0587(+)
115713.CPn0580(+)
115713.CPn0745(+)not used
115713.CPn0728(+)
115713.CPn0513(+)
115713.CPn0049(+)
115713.CPn0046(+)
115713.CPn0885(+)
115713.CPn0862(+)
115713.CPn0509(+)
115713.CPn0500(+)
115713.CPn0554(+)
115713.CPn1071(+)
115713.CPn0169(+)
115713.CPn0566(+)
115713.CPn0220(+)
115713.CPn0756(+)
115713.CPn0136(+)
115713.CPn0918(+)
115713.CPn0856(+)
115713.CPn0989(+)
115713.CPn0355(+)
115713.CPn0405(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================