Effective results for Glaciecola nitratireducens FR1064 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 15 proteins (2 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1085623.GNIT_0935(PF04784)ER
1085623.GNIT_1936(PF04784)ER
1085623.GNIT_0752PF05735ER
1085623.GNIT_1292(PF11815)mitochondrial
1085623.GNIT_0974(PF02010)ER
1085623.GNIT_1809(PF08761)(mitochondrial)
1085623.GNIT_2629(PF04784)ER
1085623.GNIT_2637(PF04862)ER
1085623.GNIT_0093(PF04784)
1085623.GNIT_3231(PF00332)
1085623.GNIT_3230(PF00332)
1085623.GNIT_1099PF03096
1085623.GNIT_1547(PF08761)
1085623.GNIT_1979(PF14792)
1085623.GNIT_3400(PF02460)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================