Metamenu

Effective results for Agrobacterium tumefaciens F2 (eggnog40)

Summary

Number of putative secreted proteins: 105
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 25 proteins (0 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1050720.Agau_C101654(PF13343)ER
1050720.Agau_C200087(PF13449)ER
1050720.Agau_C101194(PF05063)mitochondrial; (mitochondrial)
1050720.Agau_C200429+ER
1050720.Agau_L300235+(mitochondrial)
1050720.Agau_L101155+ER
1050720.Agau_L101410(PF13343)ER
1050720.Agau_L101572+mitochondrial
1050720.Agau_L101069+mitochondrial
1050720.Agau_L200043+mitochondrial
1050720.Agau_C200281(PF13343)mitochondrial
1050720.Agau_L101477+(ER)
1050720.Agau_C200491(PF13343)ER
1050720.Agau_C201636+(mitochondrial); plastid
1050720.Agau_C100102+ER
1050720.Agau_C100431(PF13343)ER
1050720.Agau_L101485+ER
1050720.Agau_C101105+ER
1050720.Agau_L100211(PF13449)(mitochondrial)
1050720.Agau_L300067+ER
1050720.Agau_L100532(PF13343)(mitochondrial)
1050720.Agau_C201567(PF06455)ER
1050720.Agau_C200223+(mitochondrial)
1050720.Agau_L100463+mitochondrial; (mitochondrial)
1050720.Agau_C201795(PF13449)ER
1050720.Agau_C200544+ER
1050720.Agau_L300031+(mitochondrial)
1050720.Agau_C201787+ER
1050720.Agau_C101320(PF13343)plastid
1050720.Agau_L300626(PF05063)(ER)
1050720.Agau_C102055+(ER)
1050720.Agau_C201410+plastid
1050720.Agau_L100322+(mitochondrial)
1050720.Agau_C100526+plastid
1050720.Agau_C201590(PF13449)(ER)
1050720.Agau_C201558+(mitochondrial)
1050720.Agau_L101300+(plastid)
1050720.Agau_L100763(PF16332)
1050720.Agau_C100707(PF09731)
1050720.Agau_C201443+
1050720.Agau_C101478+
1050720.Agau_L101748(PF13343)
1050720.Agau_L101741(PF16387)
1050720.Agau_L300396+
1050720.Agau_C100451+
1050720.Agau_C200954+
1050720.Agau_C100432(PF13343)
1050720.Agau_L300223+
1050720.Agau_C101462+
1050720.Agau_L300357(PF06032)
1050720.Agau_L300353(PF06032)
1050720.Agau_L300215+
1050720.Agau_C200532+
1050720.Agau_C100024+
1050720.Agau_C201465(PF01442)
1050720.Agau_C200518+
1050720.Agau_C200434+
1050720.Agau_C201908+
1050720.Agau_C200610+
1050720.Agau_L100915+
1050720.Agau_C102194+
1050720.Agau_C101197+
1050720.Agau_C102345+
1050720.Agau_C101999+
1050720.Agau_C200702+
1050720.Agau_L300632+
1050720.Agau_C201861+
1050720.Agau_L100040+
1050720.Agau_C101308+
1050720.Agau_C200842+
1050720.Agau_C100051+
1050720.Agau_C100804(PF13343)
1050720.Agau_C201605+
1050720.Agau_L101297+
1050720.Agau_C100655+
1050720.Agau_L100409+
1050720.Agau_L101106+
1050720.Agau_L100219+
1050720.Agau_L200204+
1050720.Agau_L100660(PF06032)
1050720.Agau_C100374+
1050720.Agau_L400017+
1050720.Agau_C101160(PF08975)
1050720.Agau_C201033+
1050720.Agau_L100995+
1050720.Agau_L100861+
1050720.Agau_C102066+
1050720.Agau_L100513+
1050720.Agau_C101340+
1050720.Agau_C201967+
1050720.Agau_C100300+
1050720.Agau_L101141+
1050720.Agau_C201945+
1050720.Agau_C100520+
1050720.Agau_C200821+
1050720.Agau_L300463+
1050720.Agau_L101776+
1050720.Agau_C201682+
1050720.Agau_C200361+
1050720.Agau_C201301+
1050720.Agau_C101850+
1050720.Agau_L101231+
1050720.Agau_L100003+
1050720.Agau_C101712+
1050720.Agau_C102389+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.2 (12/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.25 (2/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================