Effective results for Enterobacter aerogenes KCTC 2190 (eggnog40)

Summary

Number of putative secreted proteins: 664
- Predicted by EffectiveT3: 170 (high confidence), 303 (low confidence)
- Predicted by EffectiveCCBD: 30 within, 24 before, 40 behind expected region 25..70aa
- Predicted by T4SEpre: 76
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 52 proteins (1 high, 51 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1028307.EAE_05780				(PF00854)	(ER)
1028307.EAE_23880		(>)			(mitochondrial)
1028307.EAE_11035		(<)			ER
1028307.EAE_14235			+		ER
1028307.EAE_12375			+		ER
1028307.EAE_12585			+		(mitochondrial)
1028307.EAE_10265				(PF13332)	(mitochondrial)
1028307.EAE_20830			+		ER
1028307.EAE_22690	+				(mitochondrial)
1028307.EAE_06150	(+)	+			(mitochondrial); (plastid)
1028307.EAE_08660		(>)			ER
1028307.EAE_08795		(>)			(ER)
1028307.EAE_00095			+		ER
1028307.EAE_21945			+		ER
1028307.EAE_05335		+			ER
1028307.EAE_18245			+		ER
1028307.EAE_18710			+		ER
1028307.EAE_18715	+				ER
1028307.EAE_16170	+				ER; (ER)
1028307.EAE_10070				(PF01228)	mitochondrial
1028307.EAE_17155			+		ER
1028307.EAE_13255				(PF00854)	ER
1028307.EAE_06820	+				mitochondrial; (mitochondrial)
1028307.EAE_11405			+		ER
1028307.EAE_07990			+		ER
1028307.EAE_06225	+				(ER)
1028307.EAE_04535		(>)			ER
1028307.EAE_22670		(>)			ER
1028307.EAE_22070				(PF01204)	(ER)
1028307.EAE_05465		(>)			ER
1028307.EAE_01800				(PF00577)	ER
1028307.EAE_01805				(PF00345)	ER
1028307.EAE_20695			+		ER
1028307.EAE_06975	+				(mitochondrial)
1028307.EAE_05950	+				(ER)
1028307.EAE_15985				(PF00328)	ER
1028307.EAE_14100				(PF00854)	ER
1028307.EAE_18100			+		ER
1028307.EAE_17210		(>)			ER
1028307.EAE_02260		(>)			(ER)
1028307.EAE_16630		+			ER
1028307.EAE_14825		(>)			mitochondrial; (mitochondrial)
1028307.EAE_10105			+		ER
1028307.EAE_02600				(PF00577)	ER
1028307.EAE_20910	+				(mitochondrial)
1028307.EAE_13690			+		(mitochondrial)
1028307.EAE_06635	+				(ER)
1028307.EAE_09030				(PF13332)	ER; (ER)
1028307.EAE_17050		+			ER
1028307.EAE_16320		(>)			mitochondrial
1028307.EAE_22740	(+)			(PF00345)	ER
1028307.EAE_22745				(PF00577)	ER
1028307.EAE_08600				(PF00345)	ER
1028307.EAE_15535			+		ER
1028307.EAE_01385			+		ER
1028307.EAE_00415		+			ER
1028307.EAE_04060		(>)			(mitochondrial)
1028307.EAE_06385	+				(mitochondrial)
1028307.EAE_09330			+		ER
1028307.EAE_08015			+		ER
1028307.EAE_02360				(PF00577)	ER
1028307.EAE_02365				(PF00345)	ER
1028307.EAE_02160		(<)			(ER)
1028307.EAE_10790				(PF00577)	ER
1028307.EAE_20055			+		mitochondrial
1028307.EAE_02420				(PF00345)	(mitochondrial)
1028307.EAE_10810				(PF00345)	(mitochondrial)
1028307.EAE_19335		(>)			ER
1028307.EAE_23160		(>)			ER
1028307.EAE_10785				(PF00345)	mitochondrial
1028307.EAE_12335		(>)			ER
1028307.EAE_05575			+		ER
1028307.EAE_05610	+				(mitochondrial)
1028307.EAE_13890			+		ER
1028307.EAE_12230				(PF00345)	ER
1028307.EAE_22555		+			ER
1028307.EAE_01485		+			ER
1028307.EAE_08585		(>)			(mitochondrial)
1028307.EAE_09855		(>)			(mitochondrial); (plastid)
1028307.EAE_19545			+		(ER)
1028307.EAE_11795	+				(mitochondrial); mitochondrial
1028307.EAE_09180				(PF00345)	ER
1028307.EAE_02745				(PF00345)	ER
1028307.EAE_03165	+				ER
1028307.EAE_24710				(PF00345)	ER
1028307.EAE_06085	+				(ER)
1028307.EAE_22000	+				(mitochondrial); mitochondrial
1028307.EAE_23260	+				mitochondrial; (mitochondrial)
1028307.EAE_19765		(>)			ER
1028307.EAE_03920				(PF01204)	ER
1028307.EAE_14720				(PF01228)	(mitochondrial)
1028307.EAE_24070			+		ER
1028307.EAE_03820			+		ER
1028307.EAE_13850			+		ER
1028307.EAE_14085		(>)			ER
1028307.EAE_21030			+		ER
1028307.EAE_17370		(<)			ER
1028307.EAE_02525				(PF00328)	ER
1028307.EAE_06030	+				(plastid)
1028307.EAE_06355		(<)			(ER)
1028307.EAE_08520		(<)			ER; not used
1028307.EAE_09230		+			(mitochondrial)
1028307.EAE_20835	(+)				(mitochondrial)
1028307.EAE_03305	(+)				ER
1028307.EAE_22875	+		+
1028307.EAE_07170		(<)	+
1028307.EAE_21305	+				(plastid)
1028307.EAE_22205	+				(ER)
1028307.EAE_06010	(+)				(ER)
1028307.EAE_06015	+				(plastid)
1028307.EAE_12810	(+)				mitochondrial
1028307.EAE_09325	+		+
1028307.EAE_10045	(+)				ER
1028307.EAE_20255	+				(plastid)
1028307.EAE_22785	+				(plastid)
1028307.EAE_05665			+		(plastid)
1028307.EAE_07685	(+)				mitochondrial
1028307.EAE_09175				(PF00577)	(ER)
1028307.EAE_09005	+			(PF13332)
1028307.EAE_18945	(+)				ER
1028307.EAE_01970	(+)				(mitochondrial)
1028307.EAE_06105		(<)
1028307.EAE_16670	(+)				ER; (mitochondrial)
1028307.EAE_05065	+	(>)
1028307.EAE_24790	+		+
1028307.EAE_02595				(PF00345)	(mitochondrial)
1028307.EAE_06590	(+)	+			(ER)
1028307.EAE_15170		+			(ER)
1028307.EAE_09375	(+)				ER
1028307.EAE_09395	+		+
1028307.EAE_18040	+	(<)
1028307.EAE_00355	+				(mitochondrial)
1028307.EAE_11985		+			(mitochondrial)
1028307.EAE_06530		(>)			(mitochondrial)
1028307.EAE_24580	+				(mitochondrial)
1028307.EAE_15830	+				plastid
1028307.EAE_24170	(+)				(mitochondrial)
1028307.EAE_10875		(<)			(mitochondrial); not used
1028307.EAE_15355	+				(mitochondrial)
1028307.EAE_11305		(<)			(mitochondrial)
1028307.EAE_12890	(+)				mitochondrial; (mitochondrial)
1028307.EAE_15815	+	+
1028307.EAE_17785	+				(mitochondrial)
1028307.EAE_02550	+				(ER)
1028307.EAE_03600	(+)				(mitochondrial)
1028307.EAE_04840			+		(mitochondrial)
1028307.EAE_21550			+		(ER)
1028307.EAE_23820	+				(mitochondrial)
1028307.EAE_21165			+		(mitochondrial)
1028307.EAE_22230	+			PF10548
1028307.EAE_22950	(+)	+			(plastid)
1028307.EAE_06055	(+)				ER
1028307.EAE_03635	+				(plastid)
1028307.EAE_20215	(+)				mitochondrial
1028307.EAE_21635	(+)				(mitochondrial)
1028307.EAE_14535	(+)				mitochondrial; (mitochondrial)
1028307.EAE_24355	+				(plastid)
1028307.EAE_03130	+	(>)
1028307.EAE_12275	+
1028307.EAE_02235	+
1028307.EAE_06145			+
1028307.EAE_22115		(<)
1028307.EAE_06520	+
1028307.EAE_05435		+
1028307.EAE_12470	+
1028307.EAE_23865		(<)
1028307.EAE_15120				(PF01228)
1028307.EAE_18345	+
1028307.EAE_03490			+
1028307.EAE_19430	+
1028307.EAE_01330		(<)
1028307.EAE_21900				(PF11798)
1028307.EAE_13080	+
1028307.EAE_16965	+
1028307.EAE_09190		(>)
1028307.EAE_07320	+
1028307.EAE_16360		(>)
1028307.EAE_22445	+
1028307.EAE_09285	+
1028307.EAE_11620			+
1028307.EAE_06890	+
1028307.EAE_03475		(>)
1028307.EAE_15605	+
1028307.EAE_15600	+
1028307.EAE_23505		(>)
1028307.EAE_22275		(<)
1028307.EAE_00785		(>)
1028307.EAE_23890	+
1028307.EAE_03405			+
1028307.EAE_04150	+
1028307.EAE_09750	+
1028307.EAE_05845				(PF01204)
1028307.EAE_14170	+
1028307.EAE_12320		+
1028307.EAE_03840	+
1028307.EAE_03050			+
1028307.EAE_04165	+
1028307.EAE_20820	+
1028307.EAE_13495	+
1028307.EAE_22265	+
1028307.EAE_12720	+
1028307.EAE_11130	(+)				(mitochondrial); not used
1028307.EAE_19380	+
1028307.EAE_24575	+
1028307.EAE_19655		(<)
1028307.EAE_01885	+
1028307.EAE_17705		+
1028307.EAE_10280	+				not used
1028307.EAE_16835		(<)
1028307.EAE_24220			+
1028307.EAE_06790	+
1028307.EAE_02480				(PF00854)
1028307.EAE_13240	+
1028307.EAE_07755		(>)
1028307.EAE_16200	(+)		+
1028307.EAE_19730		(<)
1028307.EAE_08425		+
1028307.EAE_20740	+
1028307.EAE_19645	+
1028307.EAE_11275	+
1028307.EAE_01345	+
1028307.EAE_16440			+
1028307.EAE_07980	+
1028307.EAE_21265	(+)				plastid
1028307.EAE_21260	+
1028307.EAE_22400			+
1028307.EAE_22530	+
1028307.EAE_22335	+				not used
1028307.EAE_23200	+
1028307.EAE_23680	+
1028307.EAE_03970			+
1028307.EAE_10595		+
1028307.EAE_11260			+
1028307.EAE_09370	+
1028307.EAE_21875	+
1028307.EAE_01105			+
1028307.EAE_00980				(PF01228)
1028307.EAE_16675			+
1028307.EAE_20275	+
1028307.EAE_06770		(<)
1028307.EAE_07425	+
1028307.EAE_13730	+
1028307.EAE_06605	+
1028307.EAE_08755			+
1028307.EAE_22435	+
1028307.EAE_12510		(>)
1028307.EAE_08570	+
1028307.EAE_19405	+
1028307.EAE_14355	+
1028307.EAE_15885	+
1028307.EAE_18620	+
1028307.EAE_00190	(+)				(plastid)
1028307.EAE_00480		+
1028307.EAE_04455	+
1028307.EAE_17115	+
1028307.EAE_16515	(+)				plastid
1028307.EAE_13030	+
1028307.EAE_20460	+
1028307.EAE_11930				(PF11798)
1028307.EAE_21190	+
1028307.EAE_12185	+
1028307.EAE_11850	+
1028307.EAE_12345	(+)				(plastid)
1028307.EAE_07725		+
1028307.EAE_11020	+
1028307.EAE_19270	+
1028307.EAE_23355	(+)				(ER)
1028307.EAE_23175			+
1028307.EAE_19695	(+)	+
1028307.EAE_19180	+
1028307.EAE_02920			+
1028307.EAE_07090	+
1028307.EAE_04280		(<)
1028307.EAE_13020			+
1028307.EAE_16255	+
1028307.EAE_10870		(>)
1028307.EAE_06135			+
1028307.EAE_11840	+
1028307.EAE_22295	+
1028307.EAE_08605				(PF00577)
1028307.EAE_18800	+
1028307.EAE_12155		(>)
1028307.EAE_15740	+
1028307.EAE_19190	+
1028307.EAE_00010		(>)
1028307.EAE_17910				(PF00854)
1028307.EAE_18485	+				not used
1028307.EAE_10545	+
1028307.EAE_05010	+
1028307.EAE_16790	+
1028307.EAE_20845	+
1028307.EAE_03390	+
1028307.EAE_04725	+
1028307.EAE_23975	+
1028307.EAE_11940	(+)				(ER); not used
1028307.EAE_00230			+
1028307.EAE_09835	+
1028307.EAE_00715	+
1028307.EAE_23025			+
1028307.EAE_11125	+
1028307.EAE_14495		(<)
1028307.EAE_14670	+
1028307.EAE_20720				(PF09994)
1028307.EAE_16780	+
1028307.EAE_07330			+
1028307.EAE_02425				(PF00577)
1028307.EAE_12985	+
1028307.EAE_21890	+
1028307.EAE_21235	+
1028307.EAE_04645			+
1028307.EAE_00515			+
1028307.EAE_11630	+
1028307.EAE_02555	(+)				(ER)
1028307.EAE_07460	(+)				(mitochondrial)
1028307.EAE_21385		+
1028307.EAE_22145				(PF11798)
1028307.EAE_03560	(+)				(mitochondrial)
1028307.EAE_02170	(+)		+
1028307.EAE_23385			+
1028307.EAE_07280	+
1028307.EAE_00030		+
1028307.EAE_00150	+
1028307.EAE_19155	+
1028307.EAE_15805		+
1028307.EAE_10145	+
1028307.EAE_20425	+
1028307.EAE_21950				(PF09994)
1028307.EAE_04305	+
1028307.EAE_19940		(<)
1028307.EAE_04745	+				not used
1028307.EAE_06675	+
1028307.EAE_06910		(>)
1028307.EAE_23955		(<)
1028307.EAE_22155		(>)
1028307.EAE_22395		(<)
1028307.EAE_07695			+
1028307.EAE_03355	(+)				(plastid)
1028307.EAE_09515		(>)
1028307.EAE_09795	+
1028307.EAE_10190	(+)				(plastid)
1028307.EAE_11575		+
1028307.EAE_05345	(+)				(plastid)
1028307.EAE_13955		(>)
1028307.EAE_21940				(PF09994)
1028307.EAE_13540	(+)				(mitochondrial)
1028307.EAE_17345	+
1028307.EAE_13155	(+)		+
1028307.EAE_16825	+
1028307.EAE_18975	(+)				(plastid)
1028307.EAE_24715				(PF00577)
1028307.EAE_01985	+
1028307.EAE_14340	+
1028307.EAE_01365	(+)				(ER)
1028307.EAE_15485		+
1028307.EAE_23335		(>)
1028307.EAE_12680	+
1028307.EAE_15640	+
1028307.EAE_08985	+
1028307.EAE_08845	+
1028307.EAE_03750	+
1028307.EAE_14995	+
1028307.EAE_11160		(>)
1028307.EAE_15935		(<)
1028307.EAE_10765	+
1028307.EAE_02750				(PF00577)
1028307.EAE_21375	+
1028307.EAE_16350			+
1028307.EAE_04175	+
1028307.EAE_10855	+
1028307.EAE_22480	+
1028307.EAE_12695		+
1028307.EAE_02325		+
1028307.EAE_12105				(PF00345)
1028307.EAE_12100				(PF00577)
1028307.EAE_15585	+
1028307.EAE_02035	+
1028307.EAE_20395			+
1028307.EAE_11825	+
1028307.EAE_05980	+
1028307.EAE_00045	+
1028307.EAE_09865		(>)
1028307.EAE_10755	+
1028307.EAE_20765			+
1028307.EAE_19610	+
1028307.EAE_20760	+
1028307.EAE_17745	+
1028307.EAE_00210	(+)			(PF09994)
1028307.EAE_21590	+
1028307.EAE_17185	+
1028307.EAE_02665	+
1028307.EAE_20980				(PF11798)
1028307.EAE_01095	(+)	+
1028307.EAE_06040		+
1028307.EAE_22035				(PF01228)
1028307.EAE_00940		(>)
1028307.EAE_12000	+
1028307.EAE_03250	+
1028307.EAE_12715	+
1028307.EAE_00675				(PF16485)
1028307.EAE_04055			+
1028307.EAE_05880	+
1028307.EAE_11990	+
1028307.EAE_04330	+
1028307.EAE_20495	+				not used
1028307.EAE_16025	(+)
1028307.EAE_13610	(+)
1028307.EAE_15615	(+)
1028307.EAE_22440	(+)
1028307.EAE_01020	(+)
1028307.EAE_12475	(+)
1028307.EAE_23885	(+)
1028307.EAE_19295	(+)
1028307.EAE_08255	(+)
1028307.EAE_09415	(+)
1028307.EAE_15545	(+)
1028307.EAE_16015	(+)
1028307.EAE_20745	(+)
1028307.EAE_14410	(+)
1028307.EAE_03785	(+)
1028307.EAE_09195	(+)
1028307.EAE_16960	(+)
1028307.EAE_05235	(+)
1028307.EAE_19915	(+)
1028307.EAE_17140	(+)
1028307.EAE_17810	(+)
1028307.EAE_02220	(+)
1028307.EAE_22695	(+)
1028307.EAE_01925	(+)
1028307.EAE_21015	(+)
1028307.EAE_22470	(+)
1028307.EAE_12575	(+)
1028307.EAE_07175	(+)
1028307.EAE_08880	(+)
1028307.EAE_23255	(+)
1028307.EAE_19625	(+)
1028307.EAE_18240	(+)
1028307.EAE_04130	(+)
1028307.EAE_16605	(+)
1028307.EAE_19800	(+)
1028307.EAE_16185	(+)
1028307.EAE_21665	(+)
1028307.EAE_13925	(+)
1028307.EAE_02070	(+)
1028307.EAE_12030	(+)
1028307.EAE_23640	(+)
1028307.EAE_15145	(+)
1028307.EAE_19385	(+)
1028307.EAE_08345	(+)
1028307.EAE_03670	(+)
1028307.EAE_18525	(+)
1028307.EAE_09690	(+)
1028307.EAE_14765	(+)
1028307.EAE_17125	(+)
1028307.EAE_18840	(+)
1028307.EAE_24040	(+)
1028307.EAE_13395	(+)
1028307.EAE_02485	(+)
1028307.EAE_15620	(+)
1028307.EAE_22520	(+)
1028307.EAE_07195	(+)
1028307.EAE_19395	(+)
1028307.EAE_08350	(+)
1028307.EAE_18720	(+)				not used
1028307.EAE_14590	(+)
1028307.EAE_17715	(+)
1028307.EAE_10450	(+)
1028307.EAE_21865	(+)
1028307.EAE_18285	(+)
1028307.EAE_06415	(+)
1028307.EAE_16665	(+)
1028307.EAE_24785	(+)
1028307.EAE_13235	(+)
1028307.EAE_13720	(+)
1028307.EAE_08630	(+)
1028307.EAE_13835	(+)
1028307.EAE_23750	(+)
1028307.EAE_04190	(+)
1028307.EAE_09900	(+)
1028307.EAE_06170	(+)
1028307.EAE_14295	(+)
1028307.EAE_14105	(+)
1028307.EAE_14565	(+)
1028307.EAE_20655	(+)
1028307.EAE_05115	(+)
1028307.EAE_24025	(+)
1028307.EAE_00985	(+)
1028307.EAE_24155	(+)
1028307.EAE_24795	(+)
1028307.EAE_06370	(+)
1028307.EAE_21600	(+)
1028307.EAE_14500	(+)
1028307.EAE_15775	(+)
1028307.EAE_22505	(+)
1028307.EAE_09570	(+)
1028307.EAE_09800	(+)
1028307.EAE_12820	(+)
1028307.EAE_18445	(+)
1028307.EAE_10610	(+)
1028307.EAE_20550	(+)
1028307.EAE_02915	(+)
1028307.EAE_10035	(+)
1028307.EAE_00195	(+)
1028307.EAE_17200	(+)
1028307.EAE_20465	(+)
1028307.EAE_11980	(+)
1028307.EAE_12180	(+)
1028307.EAE_00425	(+)
1028307.EAE_13740	(+)
1028307.EAE_05805	(+)
1028307.EAE_23595	(+)
1028307.EAE_04450	(+)
1028307.EAE_00600	(+)
1028307.EAE_15340	(+)
1028307.EAE_12760	(+)
1028307.EAE_09960	(+)
1028307.EAE_17445	(+)
1028307.EAE_09365	(+)
1028307.EAE_11665	(+)
1028307.EAE_17425	(+)
1028307.EAE_04070	(+)
1028307.EAE_21275	(+)
1028307.EAE_14305	(+)
1028307.EAE_24000	(+)
1028307.EAE_24750	(+)
1028307.EAE_16655	(+)				not used
1028307.EAE_22630	(+)
1028307.EAE_12885	(+)
1028307.EAE_01760	(+)
1028307.EAE_03400	(+)
1028307.EAE_19460	(+)
1028307.EAE_10495	(+)
1028307.EAE_18480	(+)
1028307.EAE_14795	(+)
1028307.EAE_06465	(+)
1028307.EAE_18150	(+)
1028307.EAE_01155	(+)
1028307.EAE_03975	(+)
1028307.EAE_08490	(+)
1028307.EAE_04320	(+)
1028307.EAE_02710	(+)
1028307.EAE_08885	(+)
1028307.EAE_20285	(+)
1028307.EAE_02345	(+)
1028307.EAE_14050	(+)
1028307.EAE_21085	(+)
1028307.EAE_21715	(+)
1028307.EAE_07410	(+)
1028307.EAE_11945	(+)
1028307.EAE_22370	(+)
1028307.EAE_08705	(+)
1028307.EAE_12410	(+)
1028307.EAE_23375	(+)
1028307.EAE_09945	(+)
1028307.EAE_19525	(+)
1028307.EAE_15255	(+)
1028307.EAE_15810	(+)
1028307.EAE_14405	(+)
1028307.EAE_11310	(+)
1028307.EAE_20545	(+)
1028307.EAE_21410	(+)
1028307.EAE_21145	(+)
1028307.EAE_21520	(+)
1028307.EAE_22965	(+)
1028307.EAE_06645	(+)
1028307.EAE_03460	(+)
1028307.EAE_07605	(+)
1028307.EAE_03360	(+)
1028307.EAE_13815	(+)
1028307.EAE_23030	(+)
1028307.EAE_23035	(+)
1028307.EAE_00205	(+)
1028307.EAE_07690	(+)
1028307.EAE_14265	(+)
1028307.EAE_11555	(+)
1028307.EAE_20045	(+)
1028307.EAE_02885	(+)
1028307.EAE_01045	(+)
1028307.EAE_17080	(+)
1028307.EAE_00930	(+)
1028307.EAE_06255	(+)
1028307.EAE_03045	(+)
1028307.EAE_03170	(+)
1028307.EAE_21170	(+)
1028307.EAE_22150	(+)
1028307.EAE_13120	(+)
1028307.EAE_22390	(+)
1028307.EAE_04925	(+)
1028307.EAE_08725	(+)
1028307.EAE_08855	(+)
1028307.EAE_18545	(+)
1028307.EAE_09290	(+)
1028307.EAE_06885	(+)
1028307.EAE_00400	(+)
1028307.EAE_15520	(+)
1028307.EAE_10195	(+)
1028307.EAE_14690	(+)
1028307.EAE_21045	(+)
1028307.EAE_01055	(+)
1028307.EAE_07820	(+)
1028307.EAE_20410	(+)
1028307.EAE_05755	(+)
1028307.EAE_18580	(+)
1028307.EAE_06710	(+)
1028307.EAE_01180	(+)
1028307.EAE_19955	(+)
1028307.EAE_21540	(+)
1028307.EAE_10350	(+)
1028307.EAE_12200	(+)
1028307.EAE_11060	(+)
1028307.EAE_23835	(+)
1028307.EAE_03345	(+)
1028307.EAE_10620	(+)
1028307.EAE_19850	(+)
1028307.EAE_15000	(+)
1028307.EAE_19005	(+)
1028307.EAE_11165	(+)
1028307.EAE_17120	(+)
1028307.EAE_00130	(+)
1028307.EAE_20625	(+)
1028307.EAE_02190	(+)
1028307.EAE_15645	(+)
1028307.EAE_04235	(+)
1028307.EAE_14425	(+)
1028307.EAE_14420	(+)
1028307.EAE_04520	(+)
1028307.EAE_14015	(+)
1028307.EAE_16795	(+)
1028307.EAE_17755	(+)
1028307.EAE_04035	(+)
1028307.EAE_01430	(+)
1028307.EAE_24275	(+)
1028307.EAE_24420	(+)
1028307.EAE_04760	(+)
1028307.EAE_23995	(+)
1028307.EAE_12920	(+)
1028307.EAE_04830	(+)
1028307.EAE_23845	(+)
1028307.EAE_15675	(+)
1028307.EAE_07120	(+)
1028307.EAE_03455	(+)
1028307.EAE_03245	(+)
1028307.EAE_10240	(+)
1028307.EAE_14185	(+)
1028307.EAE_20070	(+)
1028307.EAE_17740	(+)
1028307.EAE_18185	(+)
1028307.EAE_17365	(+)
1028307.EAE_20280	(+)
1028307.EAE_01420	(+)
1028307.EAE_20985	(+)
1028307.EAE_20210	(+)
1028307.EAE_01890	(+)
1028307.EAE_01895	(+)
1028307.EAE_07480	(+)
1028307.EAE_22450	(+)
1028307.EAE_13440	(+)
1028307.EAE_19860	(+)
1028307.EAE_08040	(+)
1028307.EAE_02445	(+)
1028307.EAE_18425	(+)
1028307.EAE_20385	(+)
1028307.EAE_18615	(+)
1028307.EAE_01360	(+)
1028307.EAE_10405	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.3 (3/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.0 (16/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================