Effective results for Listeria monocytogenes str. Scott A (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 55 proteins (13 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1027396.LMOSA_14530				PF12799	ER
1027396.LMOSA_29300				(PF01074) (PF07748) (PF09261)
1027396.LMOSA_11660				PF12799	ER
1027396.LMOSA_12570				PF12799	ER
1027396.LMOSA_13280				(PF01074) (PF07748) (PF09261)
1027396.LMOSA_12370				PF12799	ER
1027396.LMOSA_12360				PF12799	ER
1027396.LMOSA_11730				PF12799	ER
1027396.LMOSA_13480				PF12799	(ER); ER
1027396.LMOSA_1670				(PF05738)	ER
1027396.LMOSA_720				(PF05738)	ER
1027396.LMOSA_10560				(PF05738)	mitochondrial
1027396.LMOSA_13030				(PF01074) (PF07748) (PF09261)
1027396.LMOSA_13110				PF12799	ER
1027396.LMOSA_2450				(PF05738)	ER
1027396.LMOSA_13470				PF12799	ER
1027396.LMOSA_1680				(PF05738)	ER
1027396.LMOSA_29290				(PF01074) (PF07748) (PF09261)
1027396.LMOSA_13240				(PF00359)	(mitochondrial)
1027396.LMOSA_4700				PF14712	ER
1027396.LMOSA_11650				PF12799	ER
1027396.LMOSA_27080				PF12799	(mitochondrial); mitochondrial
1027396.LMOSA_11670				PF12799	ER
1027396.LMOSA_7010				(PF01074) (PF07748)
1027396.LMOSA_10530				(PF06777)
1027396.LMOSA_27410				(PF00834)
1027396.LMOSA_12020				(PF00359)
1027396.LMOSA_7640				(PF00359)
1027396.LMOSA_14080				(PF00359)
1027396.LMOSA_14060				(PF00359)
1027396.LMOSA_13250				(PF00359)
1027396.LMOSA_7090				(PF07653)
1027396.LMOSA_10550				(PF05738)
1027396.LMOSA_850				(PF00359)
1027396.LMOSA_6260				(PF00834)
1027396.LMOSA_2940				(PF00359)
1027396.LMOSA_14040				(PF00834)
1027396.LMOSA_12610				(PF00359)
1027396.LMOSA_13000				(PF00359)
1027396.LMOSA_17640				(PF00359)
1027396.LMOSA_860				(PF00359)
1027396.LMOSA_6340				(PF00359)
1027396.LMOSA_14100				(PF00834)
1027396.LMOSA_15320				(PF00359)
1027396.LMOSA_6350				(PF00359)
1027396.LMOSA_7000				(PF00359)
1027396.LMOSA_6180				(PF00359)
1027396.LMOSA_15330				(PF00359)
1027396.LMOSA_18100				(PF00359)
1027396.LMOSA_13040				(PF00359)
1027396.LMOSA_6280				(PF00834)
1027396.LMOSA_6170				(PF00359)
1027396.LMOSA_17540				(PF08950)
1027396.LMOSA_1260				(PF00359)
1027396.LMOSA_7540				(PF00359)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================