Metamenu

Effective results for Pusillimonas sp. T7-7 (eggnog40)

Summary

Number of putative secreted proteins: 124
- Predicted by T4SEpre: 85
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 51 proteins (0 high, 51 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1007105.PT7_3423+(PF03480)mitochondrial; (mitochondrial)
1007105.PT7_3553(PF01610)(mitochondrial)
1007105.PT7_2201+ER
1007105.PT7_1084+ER
1007105.PT7_0117+ER
1007105.PT7_3573+ER
1007105.PT7_2993+ER; (ER)
1007105.PT7_2994(PF03480)ER
1007105.PT7_2224+(ER); (plastid)
1007105.PT7_2220(PF03050)(mitochondrial)
1007105.PT7_3018(PF03480)ER
1007105.PT7_3011(PF03480)ER
1007105.PT7_2187(PF03480)ER
1007105.PT7_0678+ER
1007105.PT7_0272+mitochondrial; (plastid)
1007105.PT7_0497(PF03480)(mitochondrial)
1007105.PT7_1287+mitochondrial
1007105.PT7_0807(PF03480)mitochondrial; (mitochondrial)
1007105.PT7_3100(PF01610)(mitochondrial)
1007105.PT7_3298(PF03480)ER
1007105.PT7_3432(PF03480)ER
1007105.PT7_0650+ER
1007105.PT7_0032+ER
1007105.PT7_0665(PF03480)ER; (ER)
1007105.PT7_3112+ER
1007105.PT7_0666(PF03480)ER
1007105.PT7_0251+ER; plastid
1007105.PT7_2464(PF03480)mitochondrial
1007105.PT7_1397+(mitochondrial)
1007105.PT7_3416(PF01610)(mitochondrial)
1007105.PT7_2477(PF01610)mitochondrial
1007105.PT7_0740+mitochondrial; (mitochondrial)
1007105.PT7_3247(PF03480)ER
1007105.PT7_2716(PF03480)ER
1007105.PT7_0515+ER
1007105.PT7_1910(PF01610)(mitochondrial)
1007105.PT7_3274(PF03480)ER
1007105.PT7_1035+mitochondrial
1007105.PT7_1580(PF03480)ER
1007105.PT7_1586+ER
1007105.PT7_1362(PF01610)(mitochondrial)
1007105.PT7_0989(PF03480)ER
1007105.PT7_0161(PF03480)ER
1007105.PT7_3519+(PF07382)(mitochondrial)
1007105.PT7_0150+ER
1007105.PT7_0571(PF01610)(mitochondrial)
1007105.PT7_2617(PF03480)ER
1007105.PT7_0366(PF03480)ER; (ER)
1007105.PT7_2622+ER
1007105.PT7_2627(PF03480)ER
1007105.PT7_3531(PF03480)mitochondrial; (mitochondrial)
1007105.PT7_1573(PF03480)mitochondrial
1007105.PT7_2681+ER
1007105.PT7_3549(PF03480)ER
1007105.PT7_2948(PF03480)(mitochondrial); (ER)
1007105.PT7_1251+(mitochondrial)
1007105.PT7_0940+(mitochondrial)
1007105.PT7_2168(PF03480)(ER)
1007105.PT7_0720(PF01610)(ER)
1007105.PT7_2867+(mitochondrial)
1007105.PT7_2057+(plastid)
1007105.PT7_1216+(mitochondrial)
1007105.PT7_3559+
1007105.PT7_0288+
1007105.PT7_0598(PF01610)
1007105.PT7_0599(PF01610)
1007105.PT7_0449+
1007105.PT7_2967+
1007105.PT7_2218(PF03050)
1007105.PT7_1525+
1007105.PT7_0324+
1007105.PT7_0321+
1007105.PT7_1982+
1007105.PT7_0109+
1007105.PT7_3021+
1007105.PT7_2771+
1007105.PT7_2559+
1007105.PT7_1989+
1007105.PT7_3582+
1007105.PT7_2434+
1007105.PT7_0904(PF01610)
1007105.PT7_0871(PF03050)
1007105.PT7_0873(PF03050)
1007105.PT7_1823+
1007105.PT7_3177(PF03050)
1007105.PT7_2841(PF03050)
1007105.PT7_1510+
1007105.PT7_1260+
1007105.PT7_0248+
1007105.PT7_3296+
1007105.PT7_1709+
1007105.PT7_0384+
1007105.PT7_3114(PF11969)
1007105.PT7_2735(PF03480)
1007105.PT7_1665+
1007105.PT7_0758+
1007105.PT7_0756+
1007105.PT7_2093+
1007105.PT7_1654+
1007105.PT7_3398+
1007105.PT7_0356+
1007105.PT7_0776+
1007105.PT7_2455(PF03050)
1007105.PT7_1582+
1007105.PT7_2331+
1007105.PT7_2334+
1007105.PT7_0577+
1007105.PT7_0452+
1007105.PT7_0797+
1007105.PT7_3180(PF03050)
1007105.PT7_3674(PF07382)
1007105.PT7_2101+
1007105.PT7_1303+
1007105.PT7_0898(PF03050)
1007105.PT7_2776+
1007105.PT7_2951+
1007105.PT7_1258+
1007105.PT7_1575+
1007105.PT7_2518+
1007105.PT7_0559(PF03480)
1007105.PT7_0295+
1007105.PT7_2943+
1007105.PT7_2304+
1007105.PT7_1769+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.4 (14/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.375 (11/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================