Metamenu

Effective results for Candidatus Pelagibacter sp. IMCC9063 (eggnog40)

Summary

Number of putative secreted proteins: 9
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 9 proteins (0 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1002672.SAR11G3_01018(PF06455)ER
1002672.SAR11G3_00328(PF04127)(ER)
1002672.SAR11G3_00437(PF10013)(mitochondrial); not used
1002672.SAR11G3_00101(PF03102)
1002672.SAR11G3_00100(PF03102)
1002672.SAR11G3_00118(PF03102)
1002672.SAR11G3_00329(PF04127)
1002672.SAR11G3_00961(PF02689)
1002672.SAR11G3_00974(PF01786)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================