Metamenu

Effective results for Pseudomonas mendocina NK-01 (eggnog40)

Summary

Number of putative secreted proteins: 588
- Predicted by EffectiveT3: 151 (high confidence), 248 (low confidence)
- Predicted by EffectiveCCBD: 23 within, 10 before, 42 behind expected region 25..70aa
- Predicted by T4SEpre: 103
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 48 proteins (0 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1001585.MDS_4907+(PF05711)mitochondrial
1001585.MDS_2239(>)ER
1001585.MDS_2900+(mitochondrial)
1001585.MDS_2720+ER
1001585.MDS_1713(PF03547)ER
1001585.MDS_0404+ER
1001585.MDS_1047+ER
1001585.MDS_1048+ER
1001585.MDS_1448(>)ER
1001585.MDS_2826(PF03600)(ER)
1001585.MDS_2822(PF14330)(mitochondrial)
1001585.MDS_3601+ER
1001585.MDS_4173(PF03547)ER
1001585.MDS_4201+ER
1001585.MDS_4208(>)ER
1001585.MDS_1701+ER; (ER)
1001585.MDS_1056+ER
1001585.MDS_4642(>)ER
1001585.MDS_4645+(ER)
1001585.MDS_3615(>)ER
1001585.MDS_4745(PF09811)(mitochondrial)
1001585.MDS_0262+ER; (ER)
1001585.MDS_0265(<)ER
1001585.MDS_0465+mitochondrial; (mitochondrial)
1001585.MDS_1593(PF03600)ER
1001585.MDS_0510(PF03600)ER
1001585.MDS_1024(<)ER
1001585.MDS_4839+(ER)
1001585.MDS_3959+ER
1001585.MDS_2114(PF03547)ER
1001585.MDS_4135+ER
1001585.MDS_3155+ER
1001585.MDS_3799(PF03600)ER
1001585.MDS_3797(PF03600)ER
1001585.MDS_2760+ER
1001585.MDS_3362+ER
1001585.MDS_4782+ER
1001585.MDS_3894+mitochondrial
1001585.MDS_2311+ER
1001585.MDS_2951+ER
1001585.MDS_4249+mitochondrial
1001585.MDS_1944(<)ER
1001585.MDS_0821+ER
1001585.MDS_0954(>)(mitochondrial)
1001585.MDS_4871+ER
1001585.MDS_4873(>)ER
1001585.MDS_2339+(ER)
1001585.MDS_4467+ER
1001585.MDS_0039+ER
1001585.MDS_4912+ER
1001585.MDS_3211+ER
1001585.MDS_3851(PF03600)ER
1001585.MDS_4620+ER
1001585.MDS_0157(PF03547)ER
1001585.MDS_0576(>)ER; plastid
1001585.MDS_0484+ER
1001585.MDS_1199+(ER)
1001585.MDS_1225+ER; (ER)
1001585.MDS_0230+(mitochondrial)
1001585.MDS_0658(PF06293)(ER)
1001585.MDS_3465(>)ER
1001585.MDS_4296(>)(mitochondrial)
1001585.MDS_1239+ER; (ER)
1001585.MDS_1447+(mitochondrial)
1001585.MDS_2293(PF03162)ER
1001585.MDS_3871+ER
1001585.MDS_3492+ER
1001585.MDS_0172+ER
1001585.MDS_0757(PF03547)ER
1001585.MDS_1244+ER
1001585.MDS_3397(<)ER
1001585.MDS_3802(PF03600)ER
1001585.MDS_4603+ER
1001585.MDS_4608(<)ER
1001585.MDS_0922+(ER); ER
1001585.MDS_0921+ER; (ER)
1001585.MDS_1418(>)mitochondrial
1001585.MDS_1415(PF05711)mitochondrial
1001585.MDS_1529(>)ER
1001585.MDS_4785(PF03547)ER
1001585.MDS_4466+ER
1001585.MDS_3651+ER
1001585.MDS_3653+ER
1001585.MDS_3652(PF12483)ER
1001585.MDS_4632(>)ER
1001585.MDS_0936(PF03547)ER
1001585.MDS_3970+ER
1001585.MDS_0722(>)(mitochondrial)
1001585.MDS_2805+ER
1001585.MDS_4629+ER
1001585.MDS_1742(>)ER
1001585.MDS_4712+ER
1001585.MDS_4349+ER
1001585.MDS_0635(PF03600)ER
1001585.MDS_3598+ER
1001585.MDS_1094+ER
1001585.MDS_1091+ER
1001585.MDS_1070+ER
1001585.MDS_1275(PF09834)ER
1001585.MDS_2839(PF13455)(mitochondrial)
1001585.MDS_0678+(plastid)
1001585.MDS_4507+(mitochondrial)
1001585.MDS_2650(+)(ER)
1001585.MDS_1046+(plastid)
1001585.MDS_1285+plastid
1001585.MDS_0278(<)(plastid)
1001585.MDS_0477(+)mitochondrial
1001585.MDS_0981(+)(mitochondrial); (plastid)
1001585.MDS_0210+plastid
1001585.MDS_3898+(>)
1001585.MDS_0840(>)(mitochondrial)
1001585.MDS_1822+(mitochondrial)
1001585.MDS_0712++
1001585.MDS_4894(+)ER
1001585.MDS_1839+plastid
1001585.MDS_0003+(mitochondrial)
1001585.MDS_1804(+)(ER)
1001585.MDS_0229+(mitochondrial)
1001585.MDS_2159+(ER)
1001585.MDS_3680(+)mitochondrial
1001585.MDS_3849(>)(PF07287)
1001585.MDS_3991+(PF06293)
1001585.MDS_1818+plastid
1001585.MDS_1143(+)(ER)
1001585.MDS_4915(+)(ER)
1001585.MDS_0221+(plastid)
1001585.MDS_3696+(plastid)
1001585.MDS_4111(+)(ER)
1001585.MDS_1518++
1001585.MDS_3642+(plastid)
1001585.MDS_0222++
1001585.MDS_2464(+)ER
1001585.MDS_3111(+)(mitochondrial)
1001585.MDS_1740(+)(mitochondrial)
1001585.MDS_1258++
1001585.MDS_0329+plastid
1001585.MDS_3030(+)(mitochondrial)
1001585.MDS_4577(<)(ER)
1001585.MDS_1639(+)(ER)
1001585.MDS_1477(+)ER; (ER)
1001585.MDS_0643+(plastid)
1001585.MDS_1709+ER
1001585.MDS_2128(PF06945)
1001585.MDS_3641+
1001585.MDS_2653+
1001585.MDS_0718+
1001585.MDS_0397(+)(mitochondrial)
1001585.MDS_0396+
1001585.MDS_0403+
1001585.MDS_1916+
1001585.MDS_1840+
1001585.MDS_3521+
1001585.MDS_2008+
1001585.MDS_2823(PF07287)
1001585.MDS_2731+
1001585.MDS_3997+
1001585.MDS_4779+
1001585.MDS_0563+
1001585.MDS_4192(>)
1001585.MDS_4204+
1001585.MDS_0871(PF00464)
1001585.MDS_0657(PF06293)
1001585.MDS_1707+
1001585.MDS_1676+
1001585.MDS_4365+
1001585.MDS_3431+
1001585.MDS_1057(+)(>)
1001585.MDS_4641+
1001585.MDS_4390(+)(plastid)
1001585.MDS_3532(+)(ER)
1001585.MDS_2037(>)
1001585.MDS_1343(>)
1001585.MDS_2584+
1001585.MDS_2695+
1001585.MDS_2360+
1001585.MDS_2361+
1001585.MDS_0887+
1001585.MDS_0883+
1001585.MDS_4690+
1001585.MDS_4692+
1001585.MDS_4741+
1001585.MDS_4001+
1001585.MDS_3766+
1001585.MDS_0130+
1001585.MDS_4235+
1001585.MDS_0261+
1001585.MDS_0862(PF00464)
1001585.MDS_0460+
1001585.MDS_1331+
1001585.MDS_0365+
1001585.MDS_0249+
1001585.MDS_2029(PF07287)
1001585.MDS_2027+
1001585.MDS_2757+
1001585.MDS_1646+
1001585.MDS_4754(+)(ER)
1001585.MDS_4352(+)+
1001585.MDS_0214+
1001585.MDS_4537+
1001585.MDS_4531+
1001585.MDS_0859+
1001585.MDS_0327(PF06945)
1001585.MDS_1612+
1001585.MDS_1581+
1001585.MDS_1924+
1001585.MDS_0053+
1001585.MDS_4796+
1001585.MDS_2306+
1001585.MDS_2763(>)
1001585.MDS_2946+
1001585.MDS_0191(PF09537)
1001585.MDS_0209+
1001585.MDS_1824(>)
1001585.MDS_0448+
1001585.MDS_1626(>)
1001585.MDS_1000+
1001585.MDS_1559(PF00464)
1001585.MDS_1656+
1001585.MDS_2174+
1001585.MDS_2795(+)(plastid)
1001585.MDS_2956+
1001585.MDS_4799+
1001585.MDS_4330(<)
1001585.MDS_4244+
1001585.MDS_4242+
1001585.MDS_2474(PF09834)
1001585.MDS_1835+
1001585.MDS_2479+
1001585.MDS_0948(<)
1001585.MDS_0238+
1001585.MDS_0547+
1001585.MDS_1308(+)(>)
1001585.MDS_1300+
1001585.MDS_1467(>)
1001585.MDS_1129+
1001585.MDS_2092+
1001585.MDS_4801+
1001585.MDS_3307+
1001585.MDS_3304+
1001585.MDS_2894+
1001585.MDS_3437(PF06945)not used
1001585.MDS_4650+
1001585.MDS_4474+
1001585.MDS_0950+
1001585.MDS_0956(>)
1001585.MDS_4879+
1001585.MDS_4875+
1001585.MDS_1373(PF00464)
1001585.MDS_2353+
1001585.MDS_4533+
1001585.MDS_4904(>)
1001585.MDS_2858+
1001585.MDS_4407+
1001585.MDS_3332+
1001585.MDS_3684(>)
1001585.MDS_3843(>)
1001585.MDS_3440+
1001585.MDS_3173+
1001585.MDS_1819+
1001585.MDS_1815(>)
1001585.MDS_0818(+)(PF07678)
1001585.MDS_1811(+)(>)
1001585.MDS_1813+
1001585.MDS_4266+
1001585.MDS_4864+
1001585.MDS_1848+
1001585.MDS_1844+
1001585.MDS_3324+
1001585.MDS_4519+
1001585.MDS_0383(+)(ER)
1001585.MDS_4880+
1001585.MDS_0156+
1001585.MDS_3215(PF02460)
1001585.MDS_2857+
1001585.MDS_3581+
1001585.MDS_3924+
1001585.MDS_3107(+)(plastid)
1001585.MDS_3106(>)
1001585.MDS_4455+
1001585.MDS_4451(PF00464)
1001585.MDS_0027+
1001585.MDS_4077(>)
1001585.MDS_0808+
1001585.MDS_0969+
1001585.MDS_1688+
1001585.MDS_4854(>)
1001585.MDS_1175+
1001585.MDS_1196+
1001585.MDS_2460+
1001585.MDS_1229(+)(>)
1001585.MDS_1772+
1001585.MDS_0655(PF06293)
1001585.MDS_1873+
1001585.MDS_2185+
1001585.MDS_1871+
1001585.MDS_2620+
1001585.MDS_2195+
1001585.MDS_3121+
1001585.MDS_2449+
1001585.MDS_2996+
1001585.MDS_3466+
1001585.MDS_4662+
1001585.MDS_4226+
1001585.MDS_0016+
1001585.MDS_1769+
1001585.MDS_3058+
1001585.MDS_4401+
1001585.MDS_1236(PF10013)not used
1001585.MDS_1058+
1001585.MDS_1881+
1001585.MDS_2058+
1001585.MDS_2298+
1001585.MDS_3673+
1001585.MDS_3873+
1001585.MDS_3010(PF06945)
1001585.MDS_2472+
1001585.MDS_2470(PF09537)
1001585.MDS_2471(+)(PF09537)
1001585.MDS_3700+
1001585.MDS_0679+
1001585.MDS_1750+
1001585.MDS_0915+
1001585.MDS_0825+
1001585.MDS_3829+
1001585.MDS_2989+
1001585.MDS_1403+
1001585.MDS_4948+
1001585.MDS_1891+
1001585.MDS_2516+
1001585.MDS_2287(PF06293)
1001585.MDS_0224(+)(mitochondrial)
1001585.MDS_3243+
1001585.MDS_3241+
1001585.MDS_3731(PF06945)
1001585.MDS_4422(+)(ER)
1001585.MDS_4558+
1001585.MDS_0796+
1001585.MDS_0728(>)
1001585.MDS_1745+
1001585.MDS_0432+
1001585.MDS_3591(>)
1001585.MDS_1551+
1001585.MDS_2073+
1001585.MDS_4789(>)
1001585.MDS_2670+
1001585.MDS_2816+
1001585.MDS_3814+
1001585.MDS_3813+
1001585.MDS_2926+
1001585.MDS_3721(>)
1001585.MDS_4704+
1001585.MDS_4096+
1001585.MDS_4567+
1001585.MDS_0736(+)+
1001585.MDS_0203+
1001585.MDS_1398+
1001585.MDS_1083+
1001585.MDS_1061(<)
1001585.MDS_0789+
1001585.MDS_0294+
1001585.MDS_4179+
1001585.MDS_2742+
1001585.MDS_2215+
1001585.MDS_0682+
1001585.MDS_4442+
1001585.MDS_2062+
1001585.MDS_0441+
1001585.MDS_2964+
1001585.MDS_4626+
1001585.MDS_3758+
1001585.MDS_3751(+)(plastid)
1001585.MDS_4710+
1001585.MDS_3519(+)(mitochondrial)
1001585.MDS_1895+
1001585.MDS_0413(+)+
1001585.MDS_3419(+)+
1001585.MDS_1556(+)(>)
1001585.MDS_0161+
1001585.MDS_2659(+)
1001585.MDS_2126(+)
1001585.MDS_4447(+)
1001585.MDS_2835(+)
1001585.MDS_4509(+)
1001585.MDS_4186(+)
1001585.MDS_1289(+)
1001585.MDS_4050(+)
1001585.MDS_3298(+)
1001585.MDS_0021(+)
1001585.MDS_3295(+)
1001585.MDS_2224(+)
1001585.MDS_2220(+)
1001585.MDS_0488(+)
1001585.MDS_2338(+)
1001585.MDS_3994(+)
1001585.MDS_0893(+)
1001585.MDS_0894(+)
1001585.MDS_3174(+)not used
1001585.MDS_3670(+)
1001585.MDS_4172(+)
1001585.MDS_4207(+)
1001585.MDS_0878(+)not used
1001585.MDS_1706(+)
1001585.MDS_1167(+)
1001585.MDS_1674(+)
1001585.MDS_1290(+)
1001585.MDS_1906(+)
1001585.MDS_3621(+)
1001585.MDS_2035(+)
1001585.MDS_2102(+)
1001585.MDS_3344(+)
1001585.MDS_3160(+)
1001585.MDS_4694(+)
1001585.MDS_4748(+)
1001585.MDS_4749(+)
1001585.MDS_4742(+)
1001585.MDS_4000(+)
1001585.MDS_0030(+)
1001585.MDS_2253(+)
1001585.MDS_0136(+)
1001585.MDS_0863(+)
1001585.MDS_0861(+)
1001585.MDS_1842(+)
1001585.MDS_1843(+)
1001585.MDS_2677(+)
1001585.MDS_1601(+)
1001585.MDS_1602(+)
1001585.MDS_1937(+)
1001585.MDS_4210(+)
1001585.MDS_3958(+)
1001585.MDS_1662(+)
1001585.MDS_2594(+)
1001585.MDS_2376(+)
1001585.MDS_3421(+)
1001585.MDS_2974(+)
1001585.MDS_2973(+)
1001585.MDS_3157+
1001585.MDS_4688(+)
1001585.MDS_4684(+)
1001585.MDS_3226(+)
1001585.MDS_0076(+)
1001585.MDS_4357(+)
1001585.MDS_3884(+)
1001585.MDS_0216(+)
1001585.MDS_0694(+)
1001585.MDS_1101(+)
1001585.MDS_1923(+)
1001585.MDS_4821(+)
1001585.MDS_4820(+)
1001585.MDS_2569(+)
1001585.MDS_2565+
1001585.MDS_2308(+)
1001585.MDS_0065(+)
1001585.MDS_0197(+)
1001585.MDS_0841(+)
1001585.MDS_1820(+)
1001585.MDS_1821(+)
1001585.MDS_1136(+)
1001585.MDS_3756(+)
1001585.MDS_1957(+)
1001585.MDS_4817(+)
1001585.MDS_4814(+)
1001585.MDS_2872(+)
1001585.MDS_0381(+)
1001585.MDS_2570(+)
1001585.MDS_2178(+)
1001585.MDS_2796(+)
1001585.MDS_3404(+)
1001585.MDS_3407(+)
1001585.MDS_0941(+)
1001585.MDS_1125(+)
1001585.MDS_1542(+)
1001585.MDS_1943(+)
1001585.MDS_1941(+)
1001585.MDS_1460(+)
1001585.MDS_1462(+)
1001585.MDS_2963(+)
1001585.MDS_2098(+)
1001585.MDS_2548(+)
1001585.MDS_2639(+)
1001585.MDS_4652(+)
1001585.MDS_0047(+)
1001585.MDS_0046(+)
1001585.MDS_0822(+)
1001585.MDS_1794(+)
1001585.MDS_0951(+)
1001585.MDS_0228(+)
1001585.MDS_1571(+)
1001585.MDS_1151(+)
1001585.MDS_4224(+)
1001585.MDS_2732(+)
1001585.MDS_2086(+)
1001585.MDS_3339(+)
1001585.MDS_3330(+)
1001585.MDS_2426(+)
1001585.MDS_2437(+)
1001585.MDS_3595(+)
1001585.MDS_4460(+)
1001585.MDS_0037(+)
1001585.MDS_4268(+)
1001585.MDS_0353(+)
1001585.MDS_0766(+)
1001585.MDS_0566(+)
1001585.MDS_4671(+)
1001585.MDS_0590(+)
1001585.MDS_0225(+)
1001585.MDS_2655(+)
1001585.MDS_2186(+)
1001585.MDS_2523(+)
1001585.MDS_0223(+)
1001585.MDS_2850(+)
1001585.MDS_2853(+)
1001585.MDS_3587(+)
1001585.MDS_3105(+)
1001585.MDS_0342(+)
1001585.MDS_4109(+)
1001585.MDS_0020(+)
1001585.MDS_4079(+)
1001585.MDS_4718(+)
1001585.MDS_1993(+)
1001585.MDS_1221(+)
1001585.MDS_0875(+)
1001585.MDS_2430(+)
1001585.MDS_2196(+)
1001585.MDS_2848(+)
1001585.MDS_4448(+)
1001585.MDS_4446(+)
1001585.MDS_4063(+)
1001585.MDS_0015(+)
1001585.MDS_0743(+)
1001585.MDS_0588(+)
1001585.MDS_1509(+)
1001585.MDS_1985(+)
1001585.MDS_1433(+)
1001585.MDS_1434(+)
1001585.MDS_4934(+)
1001585.MDS_4575(+)
1001585.MDS_1354(+)
1001585.MDS_2874(+)
1001585.MDS_4025(+)
1001585.MDS_3471(+)
1001585.MDS_4525(+)
1001585.MDS_0919(+)
1001585.MDS_0912(+)
1001585.MDS_4076(+)
1001585.MDS_0794(+)
1001585.MDS_3926(+)
1001585.MDS_2483(+)
1001585.MDS_3640(+)
1001585.MDS_2603(+)
1001585.MDS_0958(+)
1001585.MDS_3801(+)
1001585.MDS_2461(+)
1001585.MDS_2469(+)
1001585.MDS_4071(+)
1001585.MDS_0806(+)
1001585.MDS_1251(+)not used
1001585.MDS_2662(+)
1001585.MDS_0660(+)
1001585.MDS_2382(+)
1001585.MDS_3815(+)
1001585.MDS_2264(+)
1001585.MDS_4382(+)
1001585.MDS_3720(+)
1001585.MDS_4700(+)
1001585.MDS_3646(+)
1001585.MDS_1884(+)
1001585.MDS_1393(+)
1001585.MDS_1391(+)
1001585.MDS_1080(+)
1001585.MDS_0290(+)
1001585.MDS_2068(+)
1001585.MDS_2243(+)not used
1001585.MDS_4397(+)
1001585.MDS_4716(+)
1001585.MDS_4787(+)
1001585.MDS_4691(+)
1001585.MDS_1721(+)
1001585.MDS_2668(+)
1001585.MDS_0414(+)
1001585.MDS_0410(+)
1001585.MDS_1472(+)
1001585.MDS_2743(+)
1001585.MDS_1276(+)
1001585.MDS_1272(+)
1001585.MDS_1550(+)
1001585.MDS_1552(+)
1001585.MDS_3482(+)
1001585.MDS_2702(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.7 (7/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.5 (12/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================