Effective results for Photobacterium leiognathi subsp. mandapamensis svers.1.1. (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 46 proteins (2 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1001530.PMSV_1237(PF01773) (PF07662)ER
1001530.PMSV_711(PF02839) (PF10462)ER
1001530.PMSV_3675(PF01773) (PF07662)ER
1001530.PMSV_2268(PF01773) (PF07662)ER
1001530.PMSV_2064(PF02839) (PF02010)ER; (ER)
1001530.PMSV_824(PF01773) (PF07662)ER
1001530.PMSV_1202(PF01773) (PF07662)ER
1001530.PMSV_1764(PF02275)ER
1001530.PMSV_1232(PF03222)ER
1001530.PMSV_1235(PF02839)(ER)
1001530.PMSV_1247(PF03724)ER
1001530.PMSV_2054(PF03724)ER
1001530.PMSV_1738(PF02839)ER
1001530.PMSV_469(PF01179)ER
1001530.PMSV_468(PF01179)ER
1001530.PMSV_1892(PF10462)ER
1001530.PMSV_2120(PF02839)(ER)
1001530.PMSV_2000(PF02839)ER
1001530.PMSV_543(PF03724)ER
1001530.PMSV_541(PF03222)ER
1001530.PMSV_1138(PF00031)ER
1001530.PMSV_371(PF02275)ER
1001530.PMSV_159(PF03724)ER
1001530.PMSV_1128PF00362(mitochondrial)
1001530.PMSV_1303(PF03724)ER
1001530.PMSV_2301(PF02839)ER; (ER)
1001530.PMSV_66(PF03222)(ER)
1001530.PMSV_941(PF08180)ER
1001530.PMSV_1157(PF02839)(ER)
1001530.PMSV_2427PF00531
1001530.PMSV_1432(PF12344)
1001530.PMSV_1984(PF12344)
1001530.PMSV_2632(PF10063)
1001530.PMSV_1243(PF01786)
1001530.PMSV_2624(PF02275)
1001530.PMSV_2610(PF04399)
1001530.PMSV_726(PF00677)
1001530.PMSV_1472(PF03222)
1001530.PMSV_803(PF12588)
1001530.PMSV_1846(PF00677)
1001530.PMSV_1599(PF04399)
1001530.PMSV_597(PF03222)
1001530.PMSV_178(PF00677)
1001530.PMSV_144(PF01490)
1001530.PMSV_1823(PF02839)
1001530.PMSV_1838(PF00677)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.5 (4/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================