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Genomes encoding eukaryotic-like proteins

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PF13202 EF hand

Copy number in non-pathogens:
Mean=0.69 Stddev=1.43

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Sphingomonas-like bacterium B12 s 5 8
Haloferula sp. BvORR071 s 8 13
Pseudoalteromonas sp. TB25 s 7 11
Pseudoalteromonas sp. AC163 s 6 10
Pseudoalteromonas sp. TB13 s 7 11
Pseudoalteromonas sp. TB41 s 5 9
Pseudoalteromonas sp. NW 4327 s 6 10
Xanthomonas arboricola pv. corylina str. NCCB 100457 s 4 7
Sphingomonas sp. PAMC 26605 s 4 7
Pseudoalteromonas sp. NJ631 s 8 13
Pseudoalteromonas flavipulchra JG1 s 8 13
Pseudoalteromonas fuliginea s 6 10
Sphingomonas taxi s 4 7
Xanthomonas gardneri s 4 7
Xanthomonas gardneri s 4 7
Xanthomonas gardneri s 4 7
Xanthomonas gardneri s 4 7
Xanthomonas gardneri s 4 7
Xanthomonas gardneri s 4 7
Xanthomonas gardneri s 4 7
Xanthomonas gardneri s 4 7
Pseudoalteromonas tetraodonis s 6 10
Pseudoalteromonas lipolytica s 5 8
Stenotrophomonas maltophilia s 5 8
Stenotrophomonas maltophilia s 4 7
Pseudoalteromonas tetraodonis s 6 10
Stenotrophomonas maltophilia s 5 8
Stenotrophomonas sp. LM091 s 4 7
Xanthomonas citri subsp. citri s 4 7
Xanthomonas citri subsp. citri s 4 7
Xanthomonas citri subsp. citri s 4 7
Xanthomonas citri subsp. citri s 4 7
Xanthomonas citri subsp. citri s 4 7
Xanthomonas gardneri s 4 7
Stenotrophomonas maltophilia s 4 7

*p=pathogen;s=symbiont

Release announcements

News

  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16
  • New release 5.0 of Eukaryotic-like domains finished

    16.09.15
    F-Box domain

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

Contact

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