Genomes encoding eukaryotic-like proteins

PF11175 Protein of unknown function (DUF2961)

Copy number in non-pathogens:
Mean=0.07 Stddev=0.38

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Haloferula sp. BvORR071 s 5 2
Nocardia vaccinii NBRC 15922 s 5 2
Bifidobacterium breve s 5 2
Bifidobacterium breve s 5 2
Bifidobacterium pseudocatenulatum s 5 2
Bifidobacterium dentium s 5 2
Bifidobacterium longum subsp. infantis s 5 2
Bifidobacterium longum subsp. longum s 5 2
Bifidobacterium longum subsp. longum s 5 2
Porphyromonadaceae bacterium H1 s 5 2
Porphyromonadaceae bacterium H1 s 5 2
Bifidobacterium longum subsp. longum JCM 1217 s 5 2
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 s 5 2
Bacteroides fragilis NCTC 9343 s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Bifidobacterium longum subsp. longum F8 s 5 2
Bacteroides fragilis 638R s 5 2
Bacillus jeddahensis s 7 3
Bacteroides fragilis s 5 2
Paenibacillus riograndensis SBR5 s 5 2
Bacteroides fragilis s 5 2
[Eubacterium] rectale s 5 2
Bacteroides thetaiotaomicron s 5 2
Faecalicatena contorta s 5 2
[Eubacterium] rectale s 5 2
[Eubacterium] rectale s 7 3
Paenibacillus phocaensis s 12 5
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Bifidobacterium dentium ATCC 27678 s 5 2
Paenibacillus sp. JDR-2 s 5 2
Bifidobacterium longum subsp. longum ATCC 55813 s 5 2
Prevotella buccalis ATCC 35310 s 7 3
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 s 5 2
Bifidobacterium dentium JCVIHMP022 s 5 2
Bifidobacterium dentium ATCC 27679 s 5 2
Lachnoanaerobaculum saburreum DSM 3986 s 5 2
Bacteroides uniformis ATCC 8492 s 28 11
Lachnoanaerobaculum saburreum F0468 s 5 2
Bifidobacterium longum subsp. longum 2-2B s 5 2
Bifidobacterium longum subsp. longum 35B s 5 2
Actinomyces sp. oral taxon 448 str. F0400 s 5 2
Enterococcus faecium P1986 s 5 2
Enterococcus faecium R497 s 5 2
Enterococcus faecium R499 s 5 2
Bacteroides fragilis str. J-143-4 s 5 2
Bacteroides fragilis str. I1345 s 5 2
Bacteroides fragilis str. J38-1 s 5 2
Bacteroides fragilis str. A7 (UDC12-2) s 5 2
Bacteroides fragilis str. Ds-233 s 5 2
Bacteroides fragilis str. DS-208 s 5 2
Bacteroides fragilis str. DS-71 s 5 2
Bacteroides fragilis str. DS-166 s 5 2
Bacteroides fragilis str. 20793-3 s 5 2
Bacteroides fragilis str. 2-F-2 #4 s 5 2
Bacteroides fragilis str. 2-F-2 #7 s 5 2
Bacteroides fragilis str. 3988 T1 s 5 2
Bacteroides fragilis str. S13 L11 s 5 2
Bacteroides fragilis str. S23 R14 s 5 2
Bacteroides fragilis str. 1007-1-F #7 s 5 2
Bacteroides fragilis str. 1007-1-F #8 s 5 2
Bacteroides fragilis str. 1007-1-F #9 s 5 2
Bacteroides fragilis str. 1009-4-F #7 s 5 2
Bacteroides fragilis str. 1007-1-F #10 s 5 2
Bacteroides fragilis str. 1009-4-F #10 s 5 2
Bacteroides fragilis str. 3397 T14 s 5 2
Bacteroides fragilis str. 3397 N2 s 5 2
Bacteroides fragilis str. 3719 A10 s 5 2
Bacteroides fragilis str. 3774 T13 s 5 2
Bacteroides fragilis str. 2-F-2 #5 s 5 2
Bacteroides fragilis str. 3783N1-2 s 5 2
Bacteroides fragilis str. 3783N1-6 s 5 2
Bacteroides fragilis str. 3397 N3 s 5 2
Bacteroides fragilis str. 3783N1-8 s 5 2
Bacteroides fragilis str. 3996 N(B) 6 s 5 2
Bacteroides fragilis str. 3783N2-1 s 5 2
Bacteroides fragilis str. 3998 T(B) 4 s 5 2
Bacteroides fragilis str. 3976T7 s 5 2
Bacteroides fragilis str. 3976T8 s 5 2
Bacteroides fragilis str. 3988T(B)14 s 5 2
Bacteroides fragilis str. S6L3 s 5 2
Bacteroides fragilis str. S6L8 s 5 2
Bacteroides fragilis str. S6R5 s 5 2
Bacteroides fragilis str. S6R6 s 5 2
Bacteroides fragilis str. S24L15 s 5 2
Bacteroides fragilis str. S24L26 s 5 2
Bacteroides fragilis str. S24L34 s 5 2
Bacteroides fragilis str. S36L5 s 5 2
Bacteroides fragilis str. S36L11 s 5 2
Bacteroides fragilis str. S23L24 s 5 2
Bacteroides fragilis str. S38L3 s 5 2
Bacteroides fragilis str. S38L5 s 5 2
Bacteroides fragilis str. 3-F-2 #6 s 5 2
Bacteroides fragilis str. 34-F-2 #13 s 5 2
Bacteroides fragilis str. 1007-1-F #3 s 5 2
Bacteroides fragilis str. 1007-1-F #4 s 5 2
Bacteroides fragilis str. 3725 D9(v) s 5 2
Bacteroides fragilis str. 3998T(B)3 s 5 2
Bacteroides fragilis str. S36L12 s 5 2
Prevotella saccharolytica F0055 s 5 2
Clostridium sp. KLE 1755 s 7 3
Catonella morbi ATCC 51271 s 5 2
Bifidobacterium breve JCP7499 s 5 2
Enterococcus faecium DO s 5 2
Actinopolymorpha alba DSM 45243 s 5 2
Blautia producta ATCC 27340 = DSM 2950 s 5 2
Bradyrhizobium sp. Ec3.3 s 5 2
Paenibacillus sanguinis 2301083 = DSM 16941 s 5 2
Blautia producta ATCC 27340 = DSM 2950 s 5 2
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 s 5 2
Bacteroides fragilis 3_1_12 s 5 2
Clostridium sp. D5 s 7 3
Bacteroides sp. 2_1_16 s 5 2
Bacteroides sp. D20 s 12 5
Bacteroides sp. 4_1_36 s 28 11
Lachnospiraceae bacterium 3_1_57FAA_CT1 s 5 2
Bacteroides oleiciplenus YIT 12058 s 12 5
Dysgonomonas gadei ATCC BAA-286 s 7 3
Bacteroides fragilis CL03T00C08 s 5 2
Bacteroides fragilis CL03T12C07 s 5 2
Bacteroides fragilis CL05T12C13 s 5 2
Bacteroides fragilis CL07T00C01 s 5 2
Bacteroides fragilis CL07T12C05 s 5 2
Bacteroides uniformis CL03T00C23 s 10 4
Bacteroides uniformis CL03T12C37 s 10 4
Bacteroides fragilis HMW 610 s 5 2
Bacteroides fragilis HMW 615 s 5 2
Bacteroides fragilis HMW 616 s 5 2
Paenibacillus sonchi X19-5 s 5 2
Mycobacterium xenopi RIVM700367 s 5 2
Bifidobacterium breve DPC 6330 s 5 2
Enterococcus faecium E1679 s 5 2
Bifidobacterium longum D2957 s 5 2
Enterococcus faecium C68 s 5 2
Ensifer sp. WSM1721 s 5 2
Bifidobacterium sp. MSTE12 s 7 3
[Eubacterium rectale] ATCC 33656 s 5 2
Bifidobacterium dentium Bd1 s 5 2
Bifidobacterium longum subsp. longum BBMN68 s 5 2
Bifidobacterium longum DJO10A s 5 2
Bifidobacterium longum subsp. longum KACC 91563 s 5 2
Bifidobacterium breve UCC2003 s 5 2
Bifidobacterium asteroides PRL2011 s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Blautia schinkii DSM 10518 s 12 5
Actinomyces urogenitalis S6-C4 s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacillus coagulans s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Actinomyces urogenitalis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacillus coagulans s 5 2
Bifidobacterium asteroides s 5 2
Bacillus coagulans s 5 2
Enterococcus faecium s 5 2
Bacillus coagulans s 5 2
Bacteroides fragilis s 5 2
Bifidobacterium adolescentis s 5 2
Bacillus coagulans s 5 2
Bifidobacterium longum subsp. longum s 5 2
Mycobacterium heckeshornense s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bifidobacterium breve s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Bacteroides fragilis s 5 2
Paenibacillus jilunlii s 5 2
Enterococcus faecium s 5 2
Bacteroides fragilis s 5 2
Bifidobacterium longum subsp. longum s 5 2
Bifidobacterium longum subsp. longum s 5 2
Mycobacterium xenopi s 5 2
Bifidobacterium adolescentis s 5 2
Bifidobacterium adolescentis s 5 2
Bifidobacterium adolescentis s 5 2
Bifidobacterium longum s 5 2
Bifidobacterium longum subsp. longum s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 7 3
Enterococcus faecium s 5 2
Enterococcus faecium C68 s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Opitutaceae bacterium TSB47 s 7 3
Bifidobacterium longum s 5 2
Bifidobacterium longum subsp. longum s 5 2
Enterococcus faecium s 5 2
Paenibacillus jilunlii s 5 2
Bifidobacterium adolescentis s 5 2
Enterococcus faecium s 7 3
Maribacter ulvicola s 5 2
Bacteroides fragilis s 5 2
Eisenbergiella tayi s 5 2
Eisenbergiella tayi s 10 4
Eisenbergiella tayi s 10 4
Eisenbergiella tayi s 5 2
Eisenbergiella tayi s 5 2
Eisenbergiella tayi s 5 2
Eisenbergiella tayi s 5 2
Bacteroides fragilis s 5 2
Bacillus coagulans s 5 2
Bacteroides fragilis s 5 2
Eisenbergiella tayi s 10 4
Mycobacterium heckeshornense s 5 2
Enterococcus faecium s 5 2
Bifidobacterium longum subsp. longum s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Enterococcus faecium s 5 2
Bacteroides xylanisolvens s 5 2
Bifidobacterium breve s 5 2
Bifidobacterium dentium s 5 2
Bifidobacterium longum s 5 2
Enterococcus faecium DO s 5 2
Bacteroides fragilis YCH46 s 5 2

*p=pathogen;s=symbiont