Metamenu

Genomes encoding eukaryotic-like proteins

PF03054 tRNA methyl transferase

Copy number in non-pathogens:
Mean=1.04 Stddev=0.37

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 5 3
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 5 3
Bacteroides pyogenes DSM 20611 = JCM 6294 s 5 3
Bacteroides coprophilus DSM 18228 = JCM 13818 s 5 3
Bacteroides fragilis NCTC 9343 s 5 3
Staphylococcus aureus s 5 3
Staphylococcus intermedius NCTC 11048 s 5 3
Bacteroides fragilis 638R s 5 3
Bacteroides xylanisolvens SD CC 1b s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides thetaiotaomicron s 5 3
Bacteroides thetaiotaomicron s 5 3
Bacteroides fragilis s 5 3
Faecalibacterium prausnitzii s 5 3
Bacteroides thetaiotaomicron s 5 3
Bacteroides vulgatus s 5 3
Bacteroides thetaiotaomicron s 5 3
Flavonifractor plautii s 5 3
Bacteroides vulgatus s 5 3
Bacteroides thetaiotaomicron s 5 3
Flavonifractor plautii s 5 3
Bacteroides ovatus s 5 3
Bacteroides vulgatus s 5 3
Bacteroides thetaiotaomicron s 5 3
Faecalibacterium prausnitzii s 5 3
Bacteroides stercoris ATCC 43183 s 5 3
Bacteroides coprocola DSM 17136 s 5 3
Bacteroides intestinalis DSM 17393 s 5 3
Bacteroides plebeius DSM 17135 s 5 3
Bacteroides dorei DSM 17855 s 5 3
Bacteroides eggerthii DSM 20697 s 5 3
Campylobacter rectus RM3267 s 5 3
Campylobacter showae RM3277 s 5 3
Bacteroides xylanisolvens SD CC 1b s 5 3
Bacteroides vulgatus PC510 s 5 3
Bacteroides ovatus SD CMC 3f s 5 3
Bacteroides cellulosilyticus DSM 14838 s 8 4
Bacteroides coprophilus DSM 18228 = JCM 13818 s 5 3
Bacteroides finegoldii DSM 17565 s 5 3
Faecalibacterium prausnitzii A2-165 s 5 3
Bacteroides sp. 3_1_13 s 5 3
Clostridium orbiscindens 1_3_50AFAA s 5 3
Bacteroides helcogenes P 36-108 s 5 3
Bacteroides clarus YIT 12056 s 5 3
Bacteroides fluxus YIT 12057 s 5 3
Faecalibacterium cf. prausnitzii KLE1255 s 5 3
Bacteroides caccae ATCC 43185 s 5 3
Bacteroides ovatus ATCC 8483 s 5 3
Bacteroides uniformis ATCC 8492 s 5 3
Flavonifractor plautii ATCC 29863 s 5 3
Eubacterium ventriosum ATCC 27560 s 5 3
Campylobacter showae CSUNSWCD s 5 3
Faecalibacterium prausnitzii M21/2 s 5 3
Bacteroides fragilis str. J-143-4 s 5 3
Bacteroides fragilis str. I1345 s 5 3
Bacteroides fragilis str. J38-1 s 5 3
Bacteroides fragilis str. A7 (UDC12-2) s 5 3
Bacteroides fragilis str. Ds-233 s 5 3
Bacteroides fragilis str. DS-208 s 5 3
Bacteroides fragilis str. DS-71 s 5 3
Bacteroides fragilis str. DS-166 s 5 3
Bacteroides fragilis str. 20793-3 s 5 3
Bacteroides fragilis str. 2-F-2 #4 s 5 3
Bacteroides fragilis str. 2-F-2 #7 s 5 3
Bacteroides fragilis str. 3988 T1 s 5 3
Bacteroides fragilis str. S13 L11 s 5 3
Bacteroides fragilis str. S23 R14 s 5 3
Bacteroides fragilis str. 1007-1-F #7 s 5 3
Bacteroides fragilis str. 1007-1-F #8 s 5 3
Bacteroides fragilis str. 1007-1-F #9 s 5 3
Bacteroides fragilis str. 1009-4-F #7 s 5 3
Bacteroides fragilis str. 1007-1-F #10 s 5 3
Bacteroides fragilis str. 1009-4-F #10 s 5 3
Bacteroides fragilis str. 3397 T14 s 5 3
Bacteroides fragilis str. 3397 N2 s 5 3
Bacteroides fragilis str. 3719 A10 s 5 3
Bacteroides fragilis str. 3774 T13 s 5 3
Bacteroides fragilis str. 2-F-2 #5 s 5 3
Bacteroides fragilis str. 3783N1-2 s 5 3
Bacteroides fragilis str. 3783N1-6 s 5 3
Bacteroides fragilis str. 3397 N3 s 5 3
Bacteroides fragilis str. 3719 T6 s 5 3
Bacteroides fragilis str. 3783N1-8 s 5 3
Bacteroides fragilis str. 3996 N(B) 6 s 5 3
Bacteroides fragilis str. 3783N2-1 s 5 3
Bacteroides fragilis str. 3998 T(B) 4 s 5 3
Bacteroides fragilis str. 3986 T(B)9 s 5 3
Bacteroides fragilis str. 3976T7 s 5 3
Bacteroides fragilis str. 3986T(B)10 s 5 3
Bacteroides fragilis str. 3976T8 s 5 3
Bacteroides fragilis str. 3986 T(B)13 s 5 3
Bacteroides fragilis str. 3986 N(B)22 s 5 3
Bacteroides fragilis str. 3988T(B)14 s 5 3
Bacteroides fragilis str. S6L3 s 5 3
Bacteroides fragilis str. S6L8 s 5 3
Bacteroides fragilis str. S6R5 s 5 3
Bacteroides fragilis str. S6R6 s 5 3
Bacteroides fragilis str. S24L15 s 5 3
Bacteroides fragilis str. S24L26 s 5 3
Bacteroides fragilis str. S24L34 s 5 3
Bacteroides fragilis str. S36L5 s 5 3
Bacteroides fragilis str. S36L11 s 5 3
Bacteroides fragilis str. S23L24 s 5 3
Bacteroides fragilis str. S38L3 s 5 3
Bacteroides fragilis str. S38L5 s 5 3
Bacteroides fragilis str. 3-F-2 #6 s 5 3
Bacteroides fragilis str. 34-F-2 #13 s 5 3
Bacteroides fragilis str. 1007-1-F #3 s 5 3
Bacteroides fragilis str. 1007-1-F #4 s 5 3
Bacteroides fragilis str. 3986 N(B)19 s 5 3
Bacteroides fragilis str. 3725 D9(v) s 5 3
Bacteroides fragilis str. 3998T(B)3 s 5 3
Bacteroides fragilis str. S36L12 s 5 3
Acinetobacter baumannii 1440750 s 5 3
Clostridium sp. ATCC BAA-442 s 5 3
Bacteroides pyogenes F0041 s 5 3
Bacteroides cellulosilyticus WH2 s 8 4
Bacteroides barnesiae DSM 18169 = JCM 13652 s 5 3
Bacteroides pyogenes DSM 20611 = JCM 6294 s 5 3
Bacteroides gallinarum DSM 18171 = JCM 13658 s 5 3
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 5 3
Bacteroides fragilis 3_1_12 s 5 3
Bacteroides sp. 1_1_6 s 5 3
Bacteroides sp. 2_2_4 s 5 3
Bacteroides sp. 3_2_5 s 5 3
Bacteroides sp. 4_3_47FAA s 5 3
Bacteroides sp. 9_1_42FAA s 5 3
Bacteroides sp. D1 s 5 3
Bacteroides sp. D2 s 5 3
Bacteroides dorei 5_1_36/D4 s 5 3
Fusobacterium nucleatum subsp. vincentii 4_1_13 s 5 3
Bacteroides sp. 2_1_16 s 5 3
Bacteroides sp. 2_1_22 s 5 3
Bacteroides sp. 3_1_33FAA s 5 3
Bacteroides sp. D20 s 5 3
Fusobacterium nucleatum subsp. animalis 3_1_33 s 5 3
Bacteroides sp. 3_1_23 s 5 3
Bacteroides sp. 3_1_40A s 5 3
Bacteroides sp. 4_1_36 s 5 3
Bacteroides ovatus 3_8_47FAA s 5 3
Campylobacter sp. 10_1_50 s 5 3
Subdoligranulum sp. 4_3_54A2FAA s 5 3
Tannerella sp. 6_1_58FAA_CT1 s 5 3
Fusobacterium nucleatum subsp. vincentii 3_1_27 s 5 3
Bacteroides sp. D22 s 5 3
Bacteroides sp. 1_1_30 s 5 3
Bacteroides oleiciplenus YIT 12058 s 5 3
Bacteroides caccae CL03T12C61 s 5 3
Bacteroides cellulosilyticus CL02T12C19 s 8 4
Bacteroides dorei CL02T00C15 s 5 3
Bacteroides dorei CL02T12C06 s 5 3
Bacteroides dorei CL03T12C01 s 5 3
Bacteroides fragilis CL03T00C08 s 5 3
Bacteroides fragilis CL03T12C07 s 5 3
Bacteroides fragilis CL05T12C13 s 5 3
Bacteroides fragilis CL07T00C01 s 5 3
Bacteroides fragilis CL07T12C05 s 5 3
Bacteroides nordii CL02T12C05 s 5 3
Bacteroides ovatus CL02T12C04 s 5 3
Bacteroides ovatus CL03T12C18 s 5 3
Bacteroides salyersiae CL02T12C01 s 5 3
Bacteroides uniformis CL03T00C23 s 5 3
Bacteroides uniformis CL03T12C37 s 5 3
Bacteroides vulgatus CL09T03C04 s 5 3
Bacteroides xylanisolvens CL03T12C04 s 5 3
Bacteroides fragilis HMW 610 s 5 3
Bacteroides fragilis HMW 615 s 5 3
Bacteroides fragilis HMW 616 s 5 3
Bacteroides faecis MAJ27 s 5 3
Coprobacter fastidiosus NSB1 s 5 3
Campylobacter concisus UNSW3 s 5 3
Campylobacter concisus UNSWCD s 5 3
Campylobacter concisus ATCC 51562 s 5 3
Bacteroides sp. HPS0048 s 5 3
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 5 3
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 5 3
Bacteroides stercoris CC31F s 5 3
Campylobacter concisus 13826 s 5 3
Bacteroides vulgatus ATCC 8482 s 5 3
Arcobacter cibarius LMG 21996 s 5 3
Fusobacterium sp. CM1 s 5 3
Staphylococcus aureus subsp. aureus s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Ruminococcaceae bacterium AE2021 s 5 3
Gemmiger formicilis s 5 3
Butyrivibrio sp. AE2032 s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides thetaiotaomicron s 5 3
Arcobacter faecis s 5 3
Arcobacter sp. AF1028 s 5 3
Helicobacter pylori s 5 3
Bacteroides thetaiotaomicron s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Ruthenibacterium lactatiformans s 5 3
Campylobacter concisus s 5 3
Bacteroides fragilis s 5 3
Campylobacter concisus s 5 3
Campylobacter concisus s 5 3
Campylobacter concisus s 5 3
Campylobacter concisus s 5 3
Campylobacter concisus s 5 3
Bacteroides ovatus s 5 3
Arcobacter thereius LMG 24486 s 5 3
Bacteroides dorei CL03T12C01 s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides ovatus s 5 3
Bacteroides thetaiotaomicron s 5 3
Bacteroides caecimuris s 5 3
Flavonifractor plautii s 5 3
Staphylococcus aureus s 5 3
Staphylococcus aureus s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides ovatus s 5 3
Bacteroides fragilis s 5 3
Ruthenibacterium lactatiformans s 5 3
Bacteroides thetaiotaomicron s 5 3
Bacteroides vulgatus s 5 3
Bacteroides xylanisolvens s 5 3
Campylobacter concisus s 5 3
Bacteroides caecimuris s 5 3
Flavonifractor plautii s 5 3
Bacteroides ovatus s 5 3
Bacteroides ovatus s 5 3
Bacteroides xylanisolvens s 5 3
Bacteroides fragilis s 5 3
Bacteroides ovatus s 5 3
Bacteroides clarus YIT 12056 s 5 3
Bacteroides faecis MAJ27 s 5 3
Helicobacter pylori s 5 3
Bacteroides fragilis s 5 3
Bacteroides fragilis s 5 3
Bacteroides thetaiotaomicron s 5 3
Ruminococcaceae bacterium s 5 3
Bacteroides xylanisolvens s 5 3
Bacteroides xylanisolvens s 5 3
Bacteroides dorei s 5 3
Bacteroides ovatus s 5 3
Flavonifractor plautii s 5 3
Bacteroides dorei s 5 3
Bacteroides fragilis YCH46 s 5 3
Bacteroides thetaiotaomicron VPI-5482 s 5 3

*p=pathogen;s=symbiont