The Effective database

Effective - a database of predicted secreted bacterial proteins
Jehl MA, Arnold R, Rattei T.
Nucleic Acids Res. 2010, in press.. PMID: 21071416.

Integrated methods

Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity.
Cazalet C, Rusniok C, Brüggemann H, Zidane N, Magnier A, Ma L, Tichit M, Jarraud S, Bouchier C, Vandenesch F, Kunst F, Etienne J, Glaser P, Buchrieser C.
Nat Genet. 2004 Nov;36(11):1165-73. PMID: 15467720.

Sequence-based prediction of type III secreted proteins.
Arnold R, Brandmaier S, Kleine F, Tischler P, Heinz E, Behrens S, Niinikoski A, Mewes HW, Horn M, Rattei T.
PLoS Pathog. 2009 Apr;5(4):e1000376. PMID: 19390696.

Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S.
J Mol Biol. 2004 Jul 16;340(4):783-95. PMID: 15223320.

Review

For further information on the recognition of the TTSS signal:
Targeting effectors: the molecular recognition of Type III secreted proteins.
Arnold R, Jehl MA, Rattei T.
Microbes Infect. 2010 May;12(5):346-58. PMID: 20178857.