Effective results for Pseudohaliea rubra DSM 19751 (refseq)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 27 proteins (5 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_052094384.1PF09139(ER)
WP_035514901.1(PF00685)ER
WP_052094604.1(PF03209)mitochondrial
WP_052094383.1PF06258(ER)
WP_035515995.1(PF00209)(mitochondrial)
WP_035514903.1(PF00685)(mitochondrial)
WP_035514874.1(PF03283)mitochondrial
WP_052094453.1(PF00209)ER
WP_035516587.1(PF03209)ER
WP_035518106.1(PF03283)ER
WP_035516070.1(PF00209)(ER)
WP_035517538.1(PF12973)
WP_052094264.1(PF10504)
WP_052094381.1PF06258
WP_052094505.1PF06258
WP_035515545.1(PF12973)
WP_035514736.1(PF00209)
WP_035516163.1(PF03982)
WP_035513624.1(PF00209)
WP_035514891.1PF06258
WP_035513770.1(PF14336)
WP_035514899.1(PF00685)
WP_052094256.1(PF11815)
WP_052094263.1(PF12973)
WP_035517542.1(PF12973)
WP_035517950.1(PF12973)
WP_035516609.1(PF00685)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================