Effective results for Riemerella anatipestifer RA-GD (eggnog40)

Summary

Number of putative secreted proteins: 18
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 18 proteins (1 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
992406.RIA_0359(PF08795)(mitochondrial); (plastid)
992406.RIA_1242(PF05686)mitochondrial; ER
992406.RIA_0010(PF14771)ER
992406.RIA_0026(PF03928)ER
992406.RIA_0024(PF00576)ER
992406.RIA_0025(PF03928)(mitochondrial)
992406.RIA_1089(PF00576)ER
992406.RIA_1088(PF03928)ER
992406.RIA_1916(PF03928)ER
992406.RIA_1911(PF03928)ER
992406.RIA_1910(PF00576)ER
992406.RIA_1913(PF00576)ER
992406.RIA_1912(PF03928)ER
992406.RIA_0801(PF02689)
992406.RIA_0367(PF08795)
992406.RIA_0147(PF13906)
992406.RIA_1914(PF03928)
992406.RIA_1264PF00277

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================