Metamenu

Effective results for Vibrio brasiliensis LMG 20546 (eggnog40)

Summary

Number of putative secreted proteins: 613
- Predicted by EffectiveT3: 224 (high confidence), 282 (low confidence)
- Predicted by EffectiveCCBD: 30 within, 20 before, 56 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 15 proteins (0 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
945543.VIBR0546_08194+(mitochondrial); mitochondrial
945543.VIBR0546_16291+(mitochondrial)
945543.VIBR0546_18076(>)(ER)
945543.VIBR0546_20173(>)ER
945543.VIBR0546_16046+(ER); (plastid)
945543.VIBR0546_06042(>)ER
945543.VIBR0546_01731+(ER); ER
945543.VIBR0546_03170+(>)(mitochondrial)
945543.VIBR0546_09529(>)ER
945543.VIBR0546_07007(>)ER
945543.VIBR0546_03830+ER
945543.VIBR0546_11009+ER
945543.VIBR0546_11672(<)ER
945543.VIBR0546_13680+ER
945543.VIBR0546_03715+ER; (ER)
945543.VIBR0546_20830+ER
945543.VIBR0546_17083(PF17186)ER
945543.VIBR0546_17448+(mitochondrial); (plastid)
945543.VIBR0546_15796(>)ER
945543.VIBR0546_13820(>)(mitochondrial); mitochondrial
945543.VIBR0546_09744+(ER)
945543.VIBR0546_06922(PF08329)ER
945543.VIBR0546_20033(>)ER
945543.VIBR0546_21295(>)ER
945543.VIBR0546_06037(>)ER
945543.VIBR0546_21075(>)ER
945543.VIBR0546_01611+(ER)
945543.VIBR0546_18211+(mitochondrial); (plastid)
945543.VIBR0546_05099(>)ER
945543.VIBR0546_20730(<)mitochondrial; (mitochondrial)
945543.VIBR0546_06932(PF08329)ER
945543.VIBR0546_03882(>)ER
945543.VIBR0546_20308(PF17186)ER
945543.VIBR0546_13122+ER
945543.VIBR0546_07177(<)mitochondrial
945543.VIBR0546_00660+(ER)
945543.VIBR0546_09819(>)ER
945543.VIBR0546_02149+ER
945543.VIBR0546_11777+ER
945543.VIBR0546_16511(<)ER
945543.VIBR0546_00790+ER
945543.VIBR0546_17928(>)ER
945543.VIBR0546_09057+ER
945543.VIBR0546_08485+(mitochondrial); mitochondrial
945543.VIBR0546_01676(>)ER
945543.VIBR0546_20428+ER
945543.VIBR0546_06722+ER; (ER)
945543.VIBR0546_01441+mitochondrial
945543.VIBR0546_18992(>)ER
945543.VIBR0546_07057(<)ER
945543.VIBR0546_00120(PF08180)ER
945543.VIBR0546_21345(>)ER
945543.VIBR0546_18852(>)(mitochondrial)
945543.VIBR0546_06517(+)(mitochondrial)
945543.VIBR0546_07642(+)(mitochondrial); (ER)
945543.VIBR0546_17713(+)ER; (ER)
945543.VIBR0546_14405+plastid
945543.VIBR0546_03485(+)(ER); (mitochondrial)
945543.VIBR0546_17183+(plastid)
945543.VIBR0546_02369(+)(mitochondrial)
945543.VIBR0546_09314+plastid
945543.VIBR0546_07132+(>)
945543.VIBR0546_20970(+)ER
945543.VIBR0546_21555+plastid
945543.VIBR0546_21820(+)(mitochondrial)
945543.VIBR0546_03385(+)(ER)
945543.VIBR0546_16021(+)ER
945543.VIBR0546_14555(+)mitochondrial; (mitochondrial)
945543.VIBR0546_10894++
945543.VIBR0546_00720+(ER)
945543.VIBR0546_14882(>)(ER)
945543.VIBR0546_17858+(plastid)
945543.VIBR0546_00894+(ER)
945543.VIBR0546_08712+plastid
945543.VIBR0546_18782+plastid
945543.VIBR0546_18787+(plastid)
945543.VIBR0546_16551+(ER)
945543.VIBR0546_03525(+)(ER)
945543.VIBR0546_02805+(mitochondrial)
945543.VIBR0546_09389+(plastid)
945543.VIBR0546_11887(+)(mitochondrial)
945543.VIBR0546_06552(+)(ER)
945543.VIBR0546_06657+(>)
945543.VIBR0546_05473(+)ER
945543.VIBR0546_17783(+)(ER)
945543.VIBR0546_14450+(ER)
945543.VIBR0546_15891(+)ER
945543.VIBR0546_03725(+)ER; plastid
945543.VIBR0546_05832(+)(ER)
945543.VIBR0546_18777+plastid
945543.VIBR0546_14265(+)ER
945543.VIBR0546_13585(+)(mitochondrial)
945543.VIBR0546_07362+plastid
945543.VIBR0546_10369(PF10013)mitochondrial; not used
945543.VIBR0546_01004+(mitochondrial)
945543.VIBR0546_02061(+)ER
945543.VIBR0546_17748(+)(mitochondrial)
945543.VIBR0546_20328(PF00028)(ER)
945543.VIBR0546_13452+(plastid)
945543.VIBR0546_15696(+)mitochondrial; (mitochondrial)
945543.VIBR0546_14490+ER; not used
945543.VIBR0546_08797+(ER)
945543.VIBR0546_02785+(PF00031)
945543.VIBR0546_01661+(ER)
945543.VIBR0546_09304+plastid
945543.VIBR0546_04162(+)(mitochondrial)
945543.VIBR0546_21100+(mitochondrial)
945543.VIBR0546_18571(+)ER
945543.VIBR0546_03120+(mitochondrial)
945543.VIBR0546_05758+(ER)
945543.VIBR0546_10884+(plastid)
945543.VIBR0546_04969(+)ER
945543.VIBR0546_09949++
945543.VIBR0546_07262(+)(ER)
945543.VIBR0546_04107(+)(mitochondrial)
945543.VIBR0546_09217(+)ER
945543.VIBR0546_20168(<)
945543.VIBR0546_04032+(>)
945543.VIBR0546_16106+
945543.VIBR0546_10604+
945543.VIBR0546_18521+
945543.VIBR0546_19212+
945543.VIBR0546_03340(>)
945543.VIBR0546_04574+
945543.VIBR0546_03967+
945543.VIBR0546_11218(>)
945543.VIBR0546_05428+
945543.VIBR0546_20990(<)
945543.VIBR0546_14345+
945543.VIBR0546_07487(<)
945543.VIBR0546_10054+
945543.VIBR0546_09152+
945543.VIBR0546_10154+
945543.VIBR0546_00130+
945543.VIBR0546_21570(+)+
945543.VIBR0546_12297+
945543.VIBR0546_03210+
945543.VIBR0546_13192+
945543.VIBR0546_03175+
945543.VIBR0546_18862+
945543.VIBR0546_10504(+)(plastid)
945543.VIBR0546_19207+
945543.VIBR0546_04297(>)
945543.VIBR0546_06672+
945543.VIBR0546_05344+
945543.VIBR0546_03952+
945543.VIBR0546_20615+
945543.VIBR0546_04634+
945543.VIBR0546_01009+
945543.VIBR0546_14742+
945543.VIBR0546_03775+
945543.VIBR0546_20143+
945543.VIBR0546_21495+
945543.VIBR0546_11912+
945543.VIBR0546_14180+
945543.VIBR0546_01436+
945543.VIBR0546_17298(>)
945543.VIBR0546_21030+
945543.VIBR0546_21635+
945543.VIBR0546_06077+
945543.VIBR0546_19699+
945543.VIBR0546_12922(PF08732)
945543.VIBR0546_12927+
945543.VIBR0546_08952+
945543.VIBR0546_01099+
945543.VIBR0546_15686+
945543.VIBR0546_21550+
945543.VIBR0546_05857+
945543.VIBR0546_15576+
945543.VIBR0546_21730(+)(ER)
945543.VIBR0546_02700+
945543.VIBR0546_13935+
945543.VIBR0546_05224(>)
945543.VIBR0546_10899(+)(plastid)
945543.VIBR0546_11457+
945543.VIBR0546_08450+
945543.VIBR0546_14652+
945543.VIBR0546_14932(+)(>)
945543.VIBR0546_16828+
945543.VIBR0546_08637+
945543.VIBR0546_06272(<)
945543.VIBR0546_11079+
945543.VIBR0546_18792+
945543.VIBR0546_00045+
945543.VIBR0546_18226(+)(mitochondrial)
945543.VIBR0546_08094(>)
945543.VIBR0546_14887(<)
945543.VIBR0546_06492(PF00028)not used
945543.VIBR0546_08565+
945543.VIBR0546_02504(PF13455)
945543.VIBR0546_09027+
945543.VIBR0546_11842+
945543.VIBR0546_10249+
945543.VIBR0546_16813+
945543.VIBR0546_16818(>)
945543.VIBR0546_15366+
945543.VIBR0546_00095+
945543.VIBR0546_20123+
945543.VIBR0546_02339(>)
945543.VIBR0546_21615+
945543.VIBR0546_19789+
945543.VIBR0546_03140+
945543.VIBR0546_19419(>)
945543.VIBR0546_10649+
945543.VIBR0546_13017+
945543.VIBR0546_00899(+)(ER)
945543.VIBR0546_00760+
945543.VIBR0546_09292+
945543.VIBR0546_09379(>)
945543.VIBR0546_17913+
945543.VIBR0546_15756(>)
945543.VIBR0546_21535+
945543.VIBR0546_14150(<)
945543.VIBR0546_03635(<)
945543.VIBR0546_05119(>)
945543.VIBR0546_21440+
945543.VIBR0546_05289(>)
945543.VIBR0546_17028(>)
945543.VIBR0546_13222+
945543.VIBR0546_21195(+)ER
945543.VIBR0546_06002(+)(<)
945543.VIBR0546_02154(+)plastid
945543.VIBR0546_14440+
945543.VIBR0546_17833+
945543.VIBR0546_08762+
945543.VIBR0546_11099(+)(ER)
945543.VIBR0546_02930+
945543.VIBR0546_18426+
945543.VIBR0546_18201(>)
945543.VIBR0546_12467+
945543.VIBR0546_01178(>)
945543.VIBR0546_09364(+)plastid
945543.VIBR0546_06497+
945543.VIBR0546_01286+
945543.VIBR0546_09102+
945543.VIBR0546_14145+
945543.VIBR0546_20453+
945543.VIBR0546_21455+
945543.VIBR0546_17013+
945543.VIBR0546_11462+
945543.VIBR0546_19509+
945543.VIBR0546_05314(>)
945543.VIBR0546_18697+
945543.VIBR0546_14360+
945543.VIBR0546_05448+
945543.VIBR0546_11322(+)+
945543.VIBR0546_20023+
945543.VIBR0546_09649+
945543.VIBR0546_20118+
945543.VIBR0546_03500+
945543.VIBR0546_13062+
945543.VIBR0546_01931(+)(mitochondrial)
945543.VIBR0546_05902+
945543.VIBR0546_03065+
945543.VIBR0546_06582+
945543.VIBR0546_04529+not used
945543.VIBR0546_20980(>)
945543.VIBR0546_14917+
945543.VIBR0546_02910+
945543.VIBR0546_18171+
945543.VIBR0546_20905+
945543.VIBR0546_04472+
945543.VIBR0546_03085+
945543.VIBR0546_11387+
945543.VIBR0546_05054+
945543.VIBR0546_09344+
945543.VIBR0546_04187+
945543.VIBR0546_07562(+)(mitochondrial)
945543.VIBR0546_09287+
945543.VIBR0546_00030+
945543.VIBR0546_21470+
945543.VIBR0546_17568+
945543.VIBR0546_03625+
945543.VIBR0546_13477(>)
945543.VIBR0546_11407+
945543.VIBR0546_10809(+)(plastid)
945543.VIBR0546_04999+
945543.VIBR0546_14672+
945543.VIBR0546_12192+
945543.VIBR0546_19744+
945543.VIBR0546_01039+
945543.VIBR0546_11492+
945543.VIBR0546_02424+
945543.VIBR0546_04262(<)
945543.VIBR0546_18011+
945543.VIBR0546_04047+
945543.VIBR0546_10214(PF10063)
945543.VIBR0546_07557(<)
945543.VIBR0546_15426+
945543.VIBR0546_16908+
945543.VIBR0546_07422+not used
945543.VIBR0546_11967+
945543.VIBR0546_15511(<)
945543.VIBR0546_21405+
945543.VIBR0546_13467+
945543.VIBR0546_11437+
945543.VIBR0546_08224+
945543.VIBR0546_03415+
945543.VIBR0546_12237(<)
945543.VIBR0546_13237+
945543.VIBR0546_00330+
945543.VIBR0546_16086+
945543.VIBR0546_11827+
945543.VIBR0546_10419+
945543.VIBR0546_12427+
945543.VIBR0546_19282+
945543.VIBR0546_18376+
945543.VIBR0546_07167(+)+
945543.VIBR0546_13860+
945543.VIBR0546_05658(+)(>)
945543.VIBR0546_11193+
945543.VIBR0546_20073(+)(mitochondrial)
945543.VIBR0546_09354(+)(plastid)
945543.VIBR0546_01956+
945543.VIBR0546_06202+
945543.VIBR0546_17638+
945543.VIBR0546_14015(<)
945543.VIBR0546_18556+
945543.VIBR0546_12082(+)(plastid)
945543.VIBR0546_07307+
945543.VIBR0546_03255(PF10014)
945543.VIBR0546_12607+
945543.VIBR0546_18962+
945543.VIBR0546_17918+
945543.VIBR0546_00655+
945543.VIBR0546_10554+
945543.VIBR0546_20068+
945543.VIBR0546_20063+
945543.VIBR0546_06977+
945543.VIBR0546_03000+
945543.VIBR0546_16241+not used
945543.VIBR0546_12252+
945543.VIBR0546_03135(>)
945543.VIBR0546_18601+
945543.VIBR0546_06882+
945543.VIBR0546_20183+
945543.VIBR0546_08074+
945543.VIBR0546_08877+
945543.VIBR0546_12977+
945543.VIBR0546_04492(>)
945543.VIBR0546_11392+
945543.VIBR0546_15381+
945543.VIBR0546_21690(<)
945543.VIBR0546_01671+
945543.VIBR0546_10849(+)(plastid)
945543.VIBR0546_21740+not used
945543.VIBR0546_15531+
945543.VIBR0546_06447+
945543.VIBR0546_03230+
945543.VIBR0546_18541+
945543.VIBR0546_15586+
945543.VIBR0546_11173+
945543.VIBR0546_09142+
945543.VIBR0546_05573+
945543.VIBR0546_08862+
945543.VIBR0546_10144(>)
945543.VIBR0546_07442+
945543.VIBR0546_00540+
945543.VIBR0546_05194(>)
945543.VIBR0546_16848(PF16715)
945543.VIBR0546_17733(+)(mitochondrial)
945543.VIBR0546_15486(PF10014)
945543.VIBR0546_20515(>)
945543.VIBR0546_21350+
945543.VIBR0546_03690(>)
945543.VIBR0546_16461(>)
945543.VIBR0546_06327+
945543.VIBR0546_03200(+)(ER)
945543.VIBR0546_06437(+)(plastid)
945543.VIBR0546_19197(<)
945543.VIBR0546_04764(>)
945543.VIBR0546_11158+
945543.VIBR0546_13955+
945543.VIBR0546_00070+
945543.VIBR0546_00475(>)
945543.VIBR0546_02499+
945543.VIBR0546_13770+
945543.VIBR0546_04589+
945543.VIBR0546_04809+
945543.VIBR0546_20163+
945543.VIBR0546_07909+
945543.VIBR0546_14610+
945543.VIBR0546_01936(>)
945543.VIBR0546_04037+
945543.VIBR0546_15921+
945543.VIBR0546_18987(+)
945543.VIBR0546_19584(+)
945543.VIBR0546_19217(+)
945543.VIBR0546_02645(+)
945543.VIBR0546_17883(+)
945543.VIBR0546_18276(+)
945543.VIBR0546_00265(+)
945543.VIBR0546_08440(+)
945543.VIBR0546_16913(+)
945543.VIBR0546_09157(+)
945543.VIBR0546_06622(+)
945543.VIBR0546_21485(+)
945543.VIBR0546_00135(+)
945543.VIBR0546_02680(+)
945543.VIBR0546_16041(+)not used
945543.VIBR0546_17668(+)
945543.VIBR0546_14575(+)
945543.VIBR0546_16131(+)
945543.VIBR0546_19022(+)
945543.VIBR0546_18511(+)
945543.VIBR0546_04342(+)
945543.VIBR0546_10479(+)
945543.VIBR0546_06962(+)
945543.VIBR0546_14747(+)
945543.VIBR0546_09704(+)
945543.VIBR0546_13507(+)
945543.VIBR0546_17053(+)
945543.VIBR0546_03395(+)
945543.VIBR0546_16581(+)
945543.VIBR0546_17503(+)
945543.VIBR0546_10889(+)
945543.VIBR0546_07844(+)
945543.VIBR0546_04282(+)
945543.VIBR0546_20810(+)
945543.VIBR0546_07712(+)
945543.VIBR0546_20600(+)not used
945543.VIBR0546_14365(+)
945543.VIBR0546_13412(+)
945543.VIBR0546_07537(+)
945543.VIBR0546_20153(+)
945543.VIBR0546_09604(+)
945543.VIBR0546_10094(+)
945543.VIBR0546_20398(+)
945543.VIBR0546_21735(+)
945543.VIBR0546_17688(+)
945543.VIBR0546_00840(+)
945543.VIBR0546_02011(+)
945543.VIBR0546_19864(+)
945543.VIBR0546_18316(+)
945543.VIBR0546_06387(+)
945543.VIBR0546_00835(+)
945543.VIBR0546_08707(+)
945543.VIBR0546_12642(+)
945543.VIBR0546_16331(+)
945543.VIBR0546_13685(+)
945543.VIBR0546_18957(+)
945543.VIBR0546_20498(+)
945543.VIBR0546_09549(+)
945543.VIBR0546_10244(+)
945543.VIBR0546_16943(+)
945543.VIBR0546_04934(+)
945543.VIBR0546_13522(+)
945543.VIBR0546_11902(+)
945543.VIBR0546_02715(+)
945543.VIBR0546_17363(+)
945543.VIBR0546_03907(+)
945543.VIBR0546_21610(+)
945543.VIBR0546_12317(+)
945543.VIBR0546_06127(+)
945543.VIBR0546_03440(+)
945543.VIBR0546_16146(+)
945543.VIBR0546_13012(+)
945543.VIBR0546_15122(+)
945543.VIBR0546_06482(+)
945543.VIBR0546_04422(+)
945543.VIBR0546_10259(+)
945543.VIBR0546_09117(+)
945543.VIBR0546_05468(+)
945543.VIBR0546_09754(+)
945543.VIBR0546_02449(+)
945543.VIBR0546_17443(+)
945543.VIBR0546_19549(+)
945543.VIBR0546_02529(+)
945543.VIBR0546_19799(+)
945543.VIBR0546_13002(+)
945543.VIBR0546_10879(+)
945543.VIBR0546_02800(+)
945543.VIBR0546_03285(+)
945543.VIBR0546_09969(+)
945543.VIBR0546_03992(+)
945543.VIBR0546_00565(+)
945543.VIBR0546_15301(+)
945543.VIBR0546_12847(+)
945543.VIBR0546_06557(+)
945543.VIBR0546_14140(+)
945543.VIBR0546_03735(+)
945543.VIBR0546_00185(+)
945543.VIBR0546_03600(+)
945543.VIBR0546_10914(+)
945543.VIBR0546_10864(+)
945543.VIBR0546_17018(+)
945543.VIBR0546_21670(+)
945543.VIBR0546_19659(+)
945543.VIBR0546_03460(+)
945543.VIBR0546_11792(+)
945543.VIBR0546_07347(+)
945543.VIBR0546_00989(+)
945543.VIBR0546_08179(+)
945543.VIBR0546_10689(+)
945543.VIBR0546_17953(+)
945543.VIBR0546_09359(+)
945543.VIBR0546_21270(+)
945543.VIBR0546_04669(+)
945543.VIBR0546_03872(+)
945543.VIBR0546_07572(+)
945543.VIBR0546_12852(+)
945543.VIBR0546_21865(+)
945543.VIBR0546_07402(+)
945543.VIBR0546_17798(+)
945543.VIBR0546_21880(+)
945543.VIBR0546_02139(+)
945543.VIBR0546_06117(+)
945543.VIBR0546_15082(+)
945543.VIBR0546_12842(+)
945543.VIBR0546_12992(+)
945543.VIBR0546_03887(+)
945543.VIBR0546_20403(+)
945543.VIBR0546_00210(+)
945543.VIBR0546_06837(+)not used
945543.VIBR0546_20053(+)
945543.VIBR0546_13272(+)
945543.VIBR0546_13447(+)
945543.VIBR0546_07989(+)
945543.VIBR0546_15611(+)
945543.VIBR0546_15616(+)
945543.VIBR0546_00690(+)
945543.VIBR0546_16698+
945543.VIBR0546_01926(+)
945543.VIBR0546_03825(+)
945543.VIBR0546_14902(+)
945543.VIBR0546_05618(+)
945543.VIBR0546_18161(+)not used
945543.VIBR0546_00200(+)
945543.VIBR0546_11188(+)
945543.VIBR0546_09469(+)
945543.VIBR0546_18436(+)
945543.VIBR0546_15421(+)not used
945543.VIBR0546_20468(+)
945543.VIBR0546_13720(+)
945543.VIBR0546_02675(+)
945543.VIBR0546_01641(+)
945543.VIBR0546_09919(+)
945543.VIBR0546_11297(+)
945543.VIBR0546_07317(+)
945543.VIBR0546_11612(+)
945543.VIBR0546_16321(+)
945543.VIBR0546_11762(+)
945543.VIBR0546_04217(+)
945543.VIBR0546_13910(+)
945543.VIBR0546_09257(+)
945543.VIBR0546_11198(+)
945543.VIBR0546_05498(+)
945543.VIBR0546_20078(+)
945543.VIBR0546_19429(+)
945543.VIBR0546_02875(+)
945543.VIBR0546_19147(+)
945543.VIBR0546_19544(+)
945543.VIBR0546_10399(+)
945543.VIBR0546_13925(+)
945543.VIBR0546_12502(+)
945543.VIBR0546_09319(+)
945543.VIBR0546_19152(+)
945543.VIBR0546_14005(+)
945543.VIBR0546_11942(+)
945543.VIBR0546_03655(+)
945543.VIBR0546_16863(+)
945543.VIBR0546_11382(+)
945543.VIBR0546_16868(+)
945543.VIBR0546_02815(+)
945543.VIBR0546_19559(+)
945543.VIBR0546_05748(+)
945543.VIBR0546_10799(+)
945543.VIBR0546_04949(+)
945543.VIBR0546_18611(+)
945543.VIBR0546_15846(+)
945543.VIBR0546_08657(+)
945543.VIBR0546_13605(+)
945543.VIBR0546_00640(+)
945543.VIBR0546_06412(+)
945543.VIBR0546_10389(+)
945543.VIBR0546_10384(+)
945543.VIBR0546_14827(+)
945543.VIBR0546_04232(+)
945543.VIBR0546_15067(+)
945543.VIBR0546_16221(+)
945543.VIBR0546_16226(+)
945543.VIBR0546_10124(+)
945543.VIBR0546_13302(+)
945543.VIBR0546_12132(+)
945543.VIBR0546_15276(+)
945543.VIBR0546_05977(+)
945543.VIBR0546_13367(+)
945543.VIBR0546_13167(+)
945543.VIBR0546_12372(+)
945543.VIBR0546_17003(+)
945543.VIBR0546_09999(+)
945543.VIBR0546_00485(+)
945543.VIBR0546_09282(+)
945543.VIBR0546_04487(+)
945543.VIBR0546_11927(+)
945543.VIBR0546_06082(+)not used
945543.VIBR0546_17738(+)
945543.VIBR0546_14600(+)
945543.VIBR0546_16266(+)
945543.VIBR0546_07187(+)
945543.VIBR0546_19002(+)
945543.VIBR0546_10639(+)
945543.VIBR0546_15326(+)
945543.VIBR0546_13950(+)
945543.VIBR0546_12912(+)not used
945543.VIBR0546_01198(+)
945543.VIBR0546_06542(+)
945543.VIBR0546_11932(+)
945543.VIBR0546_06547(+)
945543.VIBR0546_21160(+)
945543.VIBR0546_01981(+)
945543.VIBR0546_19729(+)
945543.VIBR0546_13182(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.8 (8/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.75 (14/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================