Effective results for Streptococcus vestibularis F0396 (eggnog40)

Summary

Number of putative secreted proteins: 108
- Predicted by T4SEpre: 81
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 47 proteins (42 high, 5 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
904306.HMPREF9192_1716			+	PF01610	(mitochondrial)
904306.HMPREF9192_1037				(PF00163)	(mitochondrial)
904306.HMPREF9192_1107			+		ER
904306.HMPREF9192_0169			+		mitochondrial; (mitochondrial)
904306.HMPREF9192_1370			+		ER
904306.HMPREF9192_1201			+		(mitochondrial)
904306.HMPREF9192_1976				(PF00344)	mitochondrial
904306.HMPREF9192_0662			+		ER
904306.HMPREF9192_1563			+		(ER)
904306.HMPREF9192_1175			+		ER
904306.HMPREF9192_1778			+		ER
904306.HMPREF9192_0958			+		mitochondrial
904306.HMPREF9192_1148			+		ER
904306.HMPREF9192_1146			+		ER
904306.HMPREF9192_1327			+		ER
904306.HMPREF9192_1081			+		ER
904306.HMPREF9192_1888			+		ER; (ER)
904306.HMPREF9192_1445				PF01610	(mitochondrial)
904306.HMPREF9192_1454			+		ER
904306.HMPREF9192_0493			+		ER
904306.HMPREF9192_1861			+		mitochondrial; (mitochondrial)
904306.HMPREF9192_0737				PF01610	(mitochondrial)
904306.HMPREF9192_1700				(PF06176)	(mitochondrial)
904306.HMPREF9192_1675				PF02916	ER
904306.HMPREF9192_1012				(PF00344)	ER
904306.HMPREF9192_0996			+	PF01610
904306.HMPREF9192_0609			+		(mitochondrial)
904306.HMPREF9192_0982				PF01610	mitochondrial; not used
904306.HMPREF9192_1898				(PF00163)	(mitochondrial)
904306.HMPREF9192_0702			+		(mitochondrial)
904306.HMPREF9192_1040			+		(mitochondrial)
904306.HMPREF9192_0738			+	PF01610
904306.HMPREF9192_1734			+
904306.HMPREF9192_0994				PF01610
904306.HMPREF9192_1910				PF00910
904306.HMPREF9192_0528			+
904306.HMPREF9192_0357			+
904306.HMPREF9192_1943			+
904306.HMPREF9192_1588				PF01610
904306.HMPREF9192_1104			+
904306.HMPREF9192_1367				PF01610
904306.HMPREF9192_0183			+
904306.HMPREF9192_0504				PF01610
904306.HMPREF9192_0503				PF01610
904306.HMPREF9192_0502				PF01610
904306.HMPREF9192_0508			+
904306.HMPREF9192_1112				PF01610
904306.HMPREF9192_1111				PF01610
904306.HMPREF9192_1202				PF01610
904306.HMPREF9192_0403				PF01610
904306.HMPREF9192_0794			+
904306.HMPREF9192_1562			+
904306.HMPREF9192_1162			+
904306.HMPREF9192_1305			+
904306.HMPREF9192_1768			+
904306.HMPREF9192_0366			+
904306.HMPREF9192_0146			+
904306.HMPREF9192_1513			+
904306.HMPREF9192_2006			+
904306.HMPREF9192_1172			+
904306.HMPREF9192_1790				PF01610
904306.HMPREF9192_0428				PF04103
904306.HMPREF9192_1957			+
904306.HMPREF9192_1438			+
904306.HMPREF9192_1899				PF01610
904306.HMPREF9192_1552			+
904306.HMPREF9192_0330			+
904306.HMPREF9192_1885			+
904306.HMPREF9192_0205			+
904306.HMPREF9192_0062			+
904306.HMPREF9192_0321			+
904306.HMPREF9192_0920			+
904306.HMPREF9192_1459			+
904306.HMPREF9192_1981			+
904306.HMPREF9192_1655			+
904306.HMPREF9192_1192			+
904306.HMPREF9192_1449			+
904306.HMPREF9192_0266				PF01610
904306.HMPREF9192_0265				PF01610
904306.HMPREF9192_1842				PF01610
904306.HMPREF9192_0866				PF01610
904306.HMPREF9192_0002				PF01610
904306.HMPREF9192_0001				PF01610
904306.HMPREF9192_1999				PF01610
904306.HMPREF9192_0481				PF01610
904306.HMPREF9192_0061			+
904306.HMPREF9192_1050			+
904306.HMPREF9192_1274				PF01610
904306.HMPREF9192_0677			+
904306.HMPREF9192_0472				PF01610
904306.HMPREF9192_0475				PF01610
904306.HMPREF9192_0474				PF01610
904306.HMPREF9192_0709				PF01610
904306.HMPREF9192_0297			+
904306.HMPREF9192_1602				PF01610
904306.HMPREF9192_1863			+
904306.HMPREF9192_1460				PF01610
904306.HMPREF9192_0258			+
904306.HMPREF9192_0252			+
904306.HMPREF9192_0655			+
904306.HMPREF9192_0653				PF01610
904306.HMPREF9192_1498				PF01610	not used
904306.HMPREF9192_1928			+
904306.HMPREF9192_1719			+
904306.HMPREF9192_1661				PF01610
904306.HMPREF9192_0372				PF01610
904306.HMPREF9192_0976				PF01610
904306.HMPREF9192_1136				PF01610

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================