Effective results for Porphyromonas asaccharolytica DSM 20707 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 43 proteins (0 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
879243.Poras_1441(PF12799)ER
879243.Poras_0005(PF13306)ER
879243.Poras_1634(PF02368)ER
879243.Poras_1635(PF02368)ER
879243.Poras_0032(PF02368)ER
879243.Poras_0486(PF13306)ER
879243.Poras_1199(PF13306)ER
879243.Poras_1044(PF12799)ER
879243.Poras_1720(PF02368)ER
879243.Poras_0647(PF13306)(mitochondrial)
879243.Poras_0114(PF02368)ER
879243.Poras_1646(PF12799)ER
879243.Poras_0086(PF13306)ER
879243.Poras_0470(PF13306)ER
879243.Poras_0892(PF13306)ER
879243.Poras_1436(PF02368)ER
879243.Poras_0414(PF13306)ER
879243.Poras_1592(PF13306)ER
879243.Poras_0767(PF02368)ER
879243.Poras_1567(PF12799)ER
879243.Poras_1568(PF12799)ER
879243.Poras_1170(PF05034) (PF07476)plastid
879243.Poras_0754(PF13306)ER
879243.Poras_0953(PF13384)(ER)
879243.Poras_1524(PF13384)(ER)
879243.Poras_1190(PF13384)(ER)
879243.Poras_1406(PF13384)(ER)
879243.Poras_1051(PF13384)(ER)
879243.Poras_1222(PF13384)(ER)
879243.Poras_1353(PF07837) (PF02971)
879243.Poras_0023(PF02368)
879243.Poras_1613(PF02368)
879243.Poras_0237(PF02368)
879243.Poras_0850(PF01715)
879243.Poras_0440(PF04505)
879243.Poras_0441(PF04505)
879243.Poras_1136(PF01715)
879243.Poras_1699(PF04505)
879243.Poras_0752(PF05693)
879243.Poras_0436(PF13306)
879243.Poras_1172(PF14330)
879243.Poras_0974(PF16314)
879243.Poras_1622(PF13306)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================