Effective results for Selenomonas sp. oral taxon 149 str. 67H29BP (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 19 proteins (2 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
864563.HMPREF9166_0951(PF14566)ER
864563.HMPREF9166_0465(PF01871)(ER)
864563.HMPREF9166_1001(PF05684)ER
864563.HMPREF9166_1202PF00349 PF03727
864563.HMPREF9166_2285PF00349 PF03727
864563.HMPREF9166_0154(PF13151)
864563.HMPREF9166_1600(PF13844)
864563.HMPREF9166_0134(PF13541)not used
864563.HMPREF9166_0138(PF13844)
864563.HMPREF9166_0040(PF12646)
864563.HMPREF9166_0076(PF13541)
864563.HMPREF9166_2401(PF05684)
864563.HMPREF9166_1932(PF13844)
864563.HMPREF9166_1930(PF13844)
864563.HMPREF9166_1931(PF13844)
864563.HMPREF9166_0277(PF13541)
864563.HMPREF9166_0982(PF13844)
864563.HMPREF9166_0286(PF13541)
864563.HMPREF9166_1651(PF01871)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================