Effective results for Prevotella denticola F0289 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 30 proteins (1 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
767031.HMPREF9137_0525(PF03051)ER
767031.HMPREF9137_2089(PF03092)ER
767031.HMPREF9137_1730(PF03051)ER
767031.HMPREF9137_1731(PF00328)(ER)
767031.HMPREF9137_2428(PF05704)(mitochondrial)
767031.HMPREF9137_2424(PF05704)(mitochondrial)
767031.HMPREF9137_1439(PF03051)ER
767031.HMPREF9137_2013(PF03644)ER
767031.HMPREF9137_0592(PF16116)ER; (ER)
767031.HMPREF9137_0138(PF12256)ER
767031.HMPREF9137_2217(PF16314)(mitochondrial)
767031.HMPREF9137_0995(PF16116)ER
767031.HMPREF9137_0008(PF05970) (PF02689)
767031.HMPREF9137_2421(PF04991)(mitochondrial)
767031.HMPREF9137_1323(PF07837) (PF02971)
767031.HMPREF9137_0021(PF13151)
767031.HMPREF9137_0029(PF04991)
767031.HMPREF9137_1476(PF01715)
767031.HMPREF9137_0798(PF05970)
767031.HMPREF9137_0006(PF01715)
767031.HMPREF9137_0805(PF04991)
767031.HMPREF9137_2289(PF16011)
767031.HMPREF9137_0464(PF05693)
767031.HMPREF9137_0459(PF13151)
767031.HMPREF9137_0455(PF02033)
767031.HMPREF9137_0149(PF12256)
767031.HMPREF9137_0444(PF02033)
767031.HMPREF9137_2455(PF00328)
767031.HMPREF9137_0196(PF03630)
767031.HMPREF9137_1138PF16269

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================