Effective results for Paraprevotella xylaniphila YIT 11841 (eggnog40)

Summary

Number of putative secreted proteins: 231
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 51 eukaryotic-like domains, contained in 231 proteins (57 high, 174 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
762982.HMPREF9442_02371(PF00703) (PF02837) (PF16355) (PF02836)ER
762982.HMPREF9442_03114(PF00703) (PF02837) (PF16355) (PF02836)mitochondrial
762982.HMPREF9442_01583(PF00703) (PF02837) (PF16355) (PF02836)ER
762982.HMPREF9442_01115(PF00703) (PF02837) (PF16355) (PF02836)ER
762982.HMPREF9442_00262(PF00703) (PF02837) (PF16355) (PF02836)ER
762982.HMPREF9442_03462(PF00703) (PF02837) (PF16355) (PF02836)(ER); ER
762982.HMPREF9442_00869(PF00703) (PF02837) (PF02836)ER
762982.HMPREF9442_00368(PF00703) (PF02837) (PF02836)(ER)
762982.HMPREF9442_02846(PF00703) (PF02837) (PF02836)(ER)
762982.HMPREF9442_01298(PF00703) (PF02837) (PF02836)ER
762982.HMPREF9442_02876(PF00703) (PF02837) (PF02836)ER
762982.HMPREF9442_01078(PF13290) (PF04616)(ER)
762982.HMPREF9442_01307(PF00703) (PF02837) (PF16355) (PF02836)
762982.HMPREF9442_01309(PF00703) (PF02837)ER
762982.HMPREF9442_00965(PF13517) (PF00703) (PF02837) (PF02836)
762982.HMPREF9442_01437(PF00703) (PF02837)ER
762982.HMPREF9442_03043(PF00703) (PF02837)ER
762982.HMPREF9442_00447(PF13306)ER
762982.HMPREF9442_00446(PF13306)ER
762982.HMPREF9442_01408PF02469ER
762982.HMPREF9442_01409PF02469ER
762982.HMPREF9442_01404(PF13517)(ER)
762982.HMPREF9442_01405(PF13517)ER; (ER)
762982.HMPREF9442_01401(PF13517)ER
762982.HMPREF9442_03065(PF06964)ER
762982.HMPREF9442_03483(PF04616)ER
762982.HMPREF9442_02678PF17170ER
762982.HMPREF9442_00027PF17170ER
762982.HMPREF9442_01098(PF00295)ER
762982.HMPREF9442_01652PF17170ER
762982.HMPREF9442_00877PF17170ER
762982.HMPREF9442_01273PF02469ER
762982.HMPREF9442_01276PF02469ER
762982.HMPREF9442_01503(PF05704)mitochondrial; (mitochondrial)
762982.HMPREF9442_01881(PF13517)ER
762982.HMPREF9442_01867(PF02055)ER
762982.HMPREF9442_00595(PF04616)ER
762982.HMPREF9442_01462(PF13290)ER
762982.HMPREF9442_03228(PF04616)ER
762982.HMPREF9442_03226PF05426(ER)
762982.HMPREF9442_02510PF02469ER; (ER)
762982.HMPREF9442_02515(PF00295)ER
762982.HMPREF9442_02514(PF02055)ER
762982.HMPREF9442_02516PF05426ER
762982.HMPREF9442_01077(PF04616)ER
762982.HMPREF9442_00857PF17170ER
762982.HMPREF9442_00126(PF04616)ER
762982.HMPREF9442_02502PF05426ER
762982.HMPREF9442_02509PF02469ER
762982.HMPREF9442_01065PF02469ER
762982.HMPREF9442_00390PF17170ER
762982.HMPREF9442_01682(PF15979)ER
762982.HMPREF9442_02978(PF15979)(mitochondrial)
762982.HMPREF9442_02977(PF03629)(mitochondrial)
762982.HMPREF9442_02975(PF04616)ER
762982.HMPREF9442_02974(PF07944)ER
762982.HMPREF9442_00007(PF13905)ER
762982.HMPREF9442_03025(PF00295)ER
762982.HMPREF9442_01052(PF00295)ER
762982.HMPREF9442_00632PF02469ER
762982.HMPREF9442_01302(PF15979)mitochondrial; (mitochondrial)
762982.HMPREF9442_01306(PF04616)ER
762982.HMPREF9442_00125(PF04616)ER; (ER)
762982.HMPREF9442_02968(PF14587)ER
762982.HMPREF9442_02963(PF16387)ER
762982.HMPREF9442_01542(PF16338)ER
762982.HMPREF9442_01544(PF04616)ER
762982.HMPREF9442_02146(PF13517)ER
762982.HMPREF9442_01045(PF13905)ER
762982.HMPREF9442_00790PF17170ER
762982.HMPREF9442_01690(PF02055)ER
762982.HMPREF9442_00972(PF13306)(ER)
762982.HMPREF9442_01813(PF01128)(ER)
762982.HMPREF9442_01819(PF04616)ER
762982.HMPREF9442_03419(PF01094)ER
762982.HMPREF9442_03093(PF06964)ER
762982.HMPREF9442_02233PF17170ER; (ER)
762982.HMPREF9442_03435(PF04616)ER
762982.HMPREF9442_02126(PF06964)ER
762982.HMPREF9442_01372(PF13306)ER
762982.HMPREF9442_00177(PF13517)ER
762982.HMPREF9442_00176(PF06964)ER
762982.HMPREF9442_00995(PF16757)ER
762982.HMPREF9442_02848(PF04616)(mitochondrial)
762982.HMPREF9442_02845(PF06964)ER
762982.HMPREF9442_02840PF05426ER
762982.HMPREF9442_00427PF02469ER; (ER)
762982.HMPREF9442_00422PF05426ER
762982.HMPREF9442_03088(PF13517)ER
762982.HMPREF9442_03089(PF13306)(ER)
762982.HMPREF9442_03157(PF04616)ER
762982.HMPREF9442_03424PF01823ER
762982.HMPREF9442_03422PF01823ER
762982.HMPREF9442_03423PF01823ER
762982.HMPREF9442_00761PF17170ER
762982.HMPREF9442_00168(PF04616)ER
762982.HMPREF9442_00169(PF04616)ER
762982.HMPREF9442_02217(PF03629)ER
762982.HMPREF9442_02212PF17170ER
762982.HMPREF9442_01662PF17170ER
762982.HMPREF9442_00243PF02469ER
762982.HMPREF9442_00245PF02469ER
762982.HMPREF9442_00244PF02469ER
762982.HMPREF9442_02260PF17170ER
762982.HMPREF9442_01616(PF07944)ER
762982.HMPREF9442_01612(PF13306)(mitochondrial); mitochondrial
762982.HMPREF9442_00747PF05426ER
762982.HMPREF9442_01293(PF04616)ER
762982.HMPREF9442_01292(PF04616)ER
762982.HMPREF9442_01291(PF04616)ER
762982.HMPREF9442_01295(PF03629)ER
762982.HMPREF9442_01294(PF04616)ER
762982.HMPREF9442_00419PF05426ER
762982.HMPREF9442_00414(PF07944)ER
762982.HMPREF9442_03299(PF04616)ER
762982.HMPREF9442_03298(PF04616)ER
762982.HMPREF9442_03475PF02469ER
762982.HMPREF9442_03471(PF04616)ER
762982.HMPREF9442_03472PF02469(ER)
762982.HMPREF9442_02271PF05426ER
762982.HMPREF9442_02279(PF13905)ER
762982.HMPREF9442_02706PF17170ER
762982.HMPREF9442_02497(PF16332)ER
762982.HMPREF9442_00884(PF13306)ER
762982.HMPREF9442_01935PF02469ER
762982.HMPREF9442_01289(PF15979)ER
762982.HMPREF9442_00463(PF11790)ER
762982.HMPREF9442_00464(PF04616)ER
762982.HMPREF9442_01425PF02469ER
762982.HMPREF9442_01426PF02469ER
762982.HMPREF9442_03463PF02469ER
762982.HMPREF9442_03469(PF04616)ER
762982.HMPREF9442_02737(PF13306)ER
762982.HMPREF9442_01124(PF13290)ER
762982.HMPREF9442_01636(PF04616)ER
762982.HMPREF9442_01387(PF01501)(ER)
762982.HMPREF9442_00476(PF13517)ER
762982.HMPREF9442_00386(PF06964)ER
762982.HMPREF9442_00387(PF04616)ER; (ER)
762982.HMPREF9442_03387(PF04230)(ER)
762982.HMPREF9442_02037PF17170ER
762982.HMPREF9442_01396(PF08011) (PF09820)
762982.HMPREF9442_02539(PF08011) (PF09820)
762982.HMPREF9442_02505PF02469(ER)
762982.HMPREF9442_02501PF05426(mitochondrial)
762982.HMPREF9442_01303(PF02837) (PF03629)
762982.HMPREF9442_01810(PF13905)(ER)
762982.HMPREF9442_01569(PF04422) (PF04432)
762982.HMPREF9442_02237(PF04616)(mitochondrial)
762982.HMPREF9442_03450(PF08011) (PF09820)
762982.HMPREF9442_02661(PF01531)(mitochondrial)
762982.HMPREF9442_02269(PF16757)(ER)
762982.HMPREF9442_01438(PF02837) (PF03629)
762982.HMPREF9442_02471(PF04422) (PF04432)
762982.HMPREF9442_01606(PF01128)(mitochondrial)
762982.HMPREF9442_01429PF02469(ER)
762982.HMPREF9442_01400(PF04616)
762982.HMPREF9442_03062(PF13151)
762982.HMPREF9442_00028PF17170
762982.HMPREF9442_01890(PF12437)
762982.HMPREF9442_01270(PF04616)
762982.HMPREF9442_01496(PF01501)
762982.HMPREF9442_01502(PF01501)
762982.HMPREF9442_01501(PF05686)
762982.HMPREF9442_01500(PF01531)
762982.HMPREF9442_01464(PF13517)
762982.HMPREF9442_02179PF05426
762982.HMPREF9442_01675(PF02485)not used
762982.HMPREF9442_00009(PF05693)
762982.HMPREF9442_00311PF05212
762982.HMPREF9442_03115(PF06964)
762982.HMPREF9442_03112(PF11790)
762982.HMPREF9442_02409(PF04230)
762982.HMPREF9442_01300(PF07944)
762982.HMPREF9442_00309(PF03412)
762982.HMPREF9442_00306(PF03412)
762982.HMPREF9442_02369(PF16314)
762982.HMPREF9442_02410(PF04432)
762982.HMPREF9442_02090(PF02485)
762982.HMPREF9442_02091(PF03412)
762982.HMPREF9442_01047(PF03412)
762982.HMPREF9442_01044(PF03412)
762982.HMPREF9442_01957(PF08011)not used
762982.HMPREF9442_01696(PF09820)
762982.HMPREF9442_00793PF12812
762982.HMPREF9442_00152(PF12437)
762982.HMPREF9442_01553(PF04616)
762982.HMPREF9442_02045PF17170
762982.HMPREF9442_01961(PF04230)
762982.HMPREF9442_01498(PF01501)
762982.HMPREF9442_01369(PF01991)
762982.HMPREF9442_01565(PF14307)
762982.HMPREF9442_01567(PF04230)
762982.HMPREF9442_02540(PF02357)
762982.HMPREF9442_03438(PF05704)
762982.HMPREF9442_01793(PF13905)
762982.HMPREF9442_01574PF02469
762982.HMPREF9442_02847(PF04616)
762982.HMPREF9442_00686(PF13306)
762982.HMPREF9442_00428PF02469
762982.HMPREF9442_02335(PF02357)
762982.HMPREF9442_01389(PF14307)
762982.HMPREF9442_01344(PF13517)
762982.HMPREF9442_03453(PF02357)
762982.HMPREF9442_01759PF16269
762982.HMPREF9442_00248(PF16338)
762982.HMPREF9442_03449(PF08011)not used
762982.HMPREF9442_02669(PF08011)not used
762982.HMPREF9442_03442(PF01128)
762982.HMPREF9442_01617(PF07944)
762982.HMPREF9442_02528(PF01531)
762982.HMPREF9442_00418(PF00295)
762982.HMPREF9442_00413(PF16338)
762982.HMPREF9442_03501(PF09820)
762982.HMPREF9442_02670(PF09820)
762982.HMPREF9442_03476PF02469
762982.HMPREF9442_02470(PF04230)
762982.HMPREF9442_02474(PF08011)not used
762982.HMPREF9442_02496(PF07944)
762982.HMPREF9442_00462(PF09820)
762982.HMPREF9442_00467(PF01715)
762982.HMPREF9442_00465(PF02689)
762982.HMPREF9442_01421(PF13517)
762982.HMPREF9442_00269(PF01715)
762982.HMPREF9442_02395(PF03412)
762982.HMPREF9442_03465(PF02357)
762982.HMPREF9442_00725(PF14587)
762982.HMPREF9442_03358PF07959
762982.HMPREF9442_01419(PF13517)
762982.HMPREF9442_03499(PF02357)
762982.HMPREF9442_02259PF17170

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================