Effective results for Brachyspira pilosicoli 95/1000 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 72 proteins (32 high, 40 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
759914.BP951000_0732PF12796 PF00023 PF13857ER
759914.BP951000_1937PF12796 PF00023 PF13857ER
759914.BP951000_0852PF12796 PF13606 PF13857ER
759914.BP951000_1228PF12796 PF13606 PF00023ER
759914.BP951000_2003PF12796 (PF13637)ER
759914.BP951000_2007PF12796 PF13857ER
759914.BP951000_1608PF12796 PF13606ER
759914.BP951000_0080(PF13637) PF13857ER
759914.BP951000_1176PF12796 (PF13637) PF00023 PF13857
759914.BP951000_0165PF12796 PF00023ER
759914.BP951000_1438PF12796 (PF13637)ER
759914.BP951000_1433PF12796 PF13857ER; (ER)
759914.BP951000_0353PF12796 PF00023ER
759914.BP951000_0703PF12796ER
759914.BP951000_2251(PF05154)ER
759914.BP951000_2245(PF01442)(ER)
759914.BP951000_2240(PF02224)(mitochondrial); plastid
759914.BP951000_1831(PF13174)ER
759914.BP951000_0514(PF05154)ER
759914.BP951000_1938PF12796ER
759914.BP951000_1925(PF13174)ER
759914.BP951000_2218PF12796 PF00023(mitochondrial)
759914.BP951000_0943(PF06803)(mitochondrial)
759914.BP951000_0018(PF03724)ER
759914.BP951000_1161(PF13306)ER
759914.BP951000_0489PF12796ER
759914.BP951000_0488PF00023ER
759914.BP951000_2316PF12796ER
759914.BP951000_0226PF12796ER
759914.BP951000_0179PF12796ER
759914.BP951000_0170PF12796ER
759914.BP951000_1365PF12796(ER)
759914.BP951000_2054(PF13306)ER
759914.BP951000_2050(PF13306)ER
759914.BP951000_2051(PF13306)ER
759914.BP951000_2052(PF13306)ER
759914.BP951000_2053(PF13306)ER
759914.BP951000_0977(PF13306)ER
759914.BP951000_0976(PF13306)ER
759914.BP951000_0978(PF13306)ER
759914.BP951000_0740(PF05154)ER
759914.BP951000_0125PF12796ER
759914.BP951000_1432PF12796ER
759914.BP951000_0352(PF03724)ER
759914.BP951000_0435PF12796ER
759914.BP951000_0433PF12796ER
759914.BP951000_0089(PF16314)(ER)
759914.BP951000_0081(PF06803)(ER)
759914.BP951000_0215PF12796 PF00023
759914.BP951000_0032PF12796 PF13606
759914.BP951000_0017(PF03724)(plastid)
759914.BP951000_2121(PF13174)
759914.BP951000_2253PF12796
759914.BP951000_2034(PF03243)not used
759914.BP951000_2035(PF03243)
759914.BP951000_0075(PF03724)
759914.BP951000_1918(PF01195)
759914.BP951000_1917(PF01195)
759914.BP951000_0063PF12796
759914.BP951000_2239(PF02224)not used
759914.BP951000_0267(PF06241)
759914.BP951000_0457(PF13174)
759914.BP951000_0204(PF13174)
759914.BP951000_1307(PF13174)
759914.BP951000_1757(PF06803)
759914.BP951000_0571(PF02485)
759914.BP951000_0570(PF02485)
759914.BP951000_2330PF12796
759914.BP951000_1235(PF01531)
759914.BP951000_1232(PF01531)
759914.BP951000_2296(PF01531)
759914.BP951000_0921(PF06803)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================