Effective results for Prochlorococcus marinus str. MIT 9312 (eggnog40)

Summary

Number of putative secreted proteins: 108
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 90 eukaryotic-like domains, contained in 108 proteins (8 high, 100 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
74546.PMT9312_0461(PF16639) (PF01333)ER
74546.PMT9312_0571(PF11460)ER
74546.PMT9312_0570(PF10716)ER
74546.PMT9312_0700(PF00504)ER
74546.PMT9312_1109(PF01789)ER
74546.PMT9312_0508(PF13326)mitochondrial; (mitochondrial)
74546.PMT9312_0501(PF11016)ER; (ER)
74546.PMT9312_1675(PF12046)ER
74546.PMT9312_0469(PF02507)ER
74546.PMT9312_1803(PF00862)(ER)
74546.PMT9312_1736(PF01737)ER
74546.PMT9312_0256(PF12600)(ER)
74546.PMT9312_0065(PF07444)ER
74546.PMT9312_0803(PF12452)ER
74546.PMT9312_0321(PF00421)(mitochondrial)
74546.PMT9312_0936(PF11152)ER
74546.PMT9312_0239(PF07444)ER
74546.PMT9312_0234(PF04483)(mitochondrial)
74546.PMT9312_0230(PF01716)ER
74546.PMT9312_1176(PF00283)ER
74546.PMT9312_0749(PF11264)(mitochondrial)
74546.PMT9312_0114(PF05421)(ER); (plastid)
74546.PMT9312_1566(PF11341)(ER)
74546.PMT9312_0653(PF16166)ER
74546.PMT9312_0323(PF05151)ER; not used
74546.PMT9312_1540(PF11805)(ER)
74546.PMT9312_0299(PF00284) (PF00283)
74546.PMT9312_0468(PF01701)mitochondrial; not used
74546.PMT9312_0254(PF02468)ER; not used
74546.PMT9312_0255(PF02532)ER; not used
74546.PMT9312_0253(PF00737)(mitochondrial)
74546.PMT9312_0300(PF00283)(ER); not used
74546.PMT9312_0797(PF09419)
74546.PMT9312_0798(PF12527)
74546.PMT9312_0341(PF01786)
74546.PMT9312_1117(PF10674)
74546.PMT9312_0148(PF11371)
74546.PMT9312_0147(PF10664)
74546.PMT9312_0896(PF10693)
74546.PMT9312_1251(PF08041)not used
74546.PMT9312_1128(PF06298)not used
74546.PMT9312_0333(PF12899)
74546.PMT9312_1684(PF05996)
74546.PMT9312_1685(PF05996)
74546.PMT9312_0422(PF10013)not used
74546.PMT9312_1069(PF02529)not used
74546.PMT9312_0955(PF11210)
74546.PMT9312_1215PF10999
74546.PMT9312_1218PF10999
74546.PMT9312_0631(PF13455)
74546.PMT9312_0855(PF11947)
74546.PMT9312_1697(PF11623)
74546.PMT9312_0752(PF11347)
74546.PMT9312_1266(PF08854)
74546.PMT9312_0620(PF07082)
74546.PMT9312_0622PF01744
74546.PMT9312_0625(PF09493)
74546.PMT9312_0627(PF00421)
74546.PMT9312_0290PF00493
74546.PMT9312_1271(PF00421)
74546.PMT9312_1273(PF13911)
74546.PMT9312_0274(PF02533)not used
74546.PMT9312_1670(PF02531)
74546.PMT9312_1428(PF08855)
74546.PMT9312_0868(PF11282)
74546.PMT9312_0262(PF11378)
74546.PMT9312_0463(PF11267)
74546.PMT9312_1809(PF12095)
74546.PMT9312_1423(PF11317)
74546.PMT9312_1517PF01744
74546.PMT9312_0386(PF08853)
74546.PMT9312_1257(PF00421)
74546.PMT9312_1255(PF02392)
74546.PMT9312_0702(PF09493)
74546.PMT9312_1383(PF13355)
74546.PMT9312_1652(PF12617)
74546.PMT9312_1651(PF11909)
74546.PMT9312_1655PF10999
74546.PMT9312_0066(PF00504)
74546.PMT9312_0064(PF06596)
74546.PMT9312_0664(PF11833)
74546.PMT9312_0667(PF12049)
74546.PMT9312_0320(PF01405)not used
74546.PMT9312_0895(PF12159)
74546.PMT9312_1230(PF00504)not used
74546.PMT9312_1533(PF04839)
74546.PMT9312_0124(PF11910)
74546.PMT9312_0905(PF11360)
74546.PMT9312_1742(PF04481)
74546.PMT9312_1588(PF11998)
74546.PMT9312_0914(PF09353)
74546.PMT9312_0335(PF02427)
74546.PMT9312_1616(PF00223)
74546.PMT9312_1615(PF00223)
74546.PMT9312_1612(PF00796)not used
74546.PMT9312_1611(PF02605)
74546.PMT9312_1508(PF00504)not used
74546.PMT9312_1768(PF01947)
74546.PMT9312_0748PF03742not used
74546.PMT9312_0686(PF00504)not used
74546.PMT9312_0755(PF05996)
74546.PMT9312_0978(PF06799)
74546.PMT9312_1576(PF04983)
74546.PMT9312_1577(PF04983)
74546.PMT9312_0302(PF01788)
74546.PMT9312_0301PF02419not used
74546.PMT9312_0948(PF04483)
74546.PMT9312_1414(PF00504)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================