Effective results for Thermus scotoductus SA-01 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 27 proteins (5 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
743525.TSC_c11710(PF11563)(mitochondrial)
743525.TSC_c14650PF03351ER
743525.TSC_c23830(PF01875)ER; (ER)
743525.TSC_c07770(PF01909)(mitochondrial); (plastid)
743525.TSC_c06330(PF02475)(mitochondrial)
743525.TSC_c24680PF16575(mitochondrial)
743525.TSC_c07700(PF01909)(ER)
743525.TSC_c16120PF04098
743525.TSC_c00430(PF04930)
743525.TSC_c09960(PF01909)
743525.TSC_c12350(PF02171)
743525.TSC_c12580(PF01909)
743525.TSC_c06080PF04098
743525.TSC_c05370(PF01909)
743525.TSC_c17420(PF11563)
743525.TSC_c23000(PF01909)
743525.TSC_c04820PF08672
743525.TSC_c09990(PF01909)
743525.TSC_c09450(PF01875)
743525.TSC_c09700(PF00025)
743525.TSC_c12420(PF01909)
743525.TSC_c11960(PF11563)
743525.TSC_c23800(PF01909)
743525.TSC_c01130(PF01909)
743525.TSC_c01910(PF08271)not used
743525.TSC_c15950(PF14216)
743525.TSC_c20480(PF11563)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================