Effective results for Lysinibacillus fusiformis ZC1 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 87 proteins (4 high, 83 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
714961.BFZC1_23928(PF12733) (PF00395)ER
714961.BFZC1_20823(PF01497)ER
714961.BFZC1_18085(PF01497)ER
714961.BFZC1_09910(PF01497)ER
714961.BFZC1_22097(PF16472)ER
714961.BFZC1_07308(PF00395)ER
714961.BFZC1_16669(PF00395)ER
714961.BFZC1_23688(PF01497)ER
714961.BFZC1_17034(PF00395)ER
714961.BFZC1_06313(PF00395)ER
714961.BFZC1_06318(PF00395)ER
714961.BFZC1_18465(PF00395)ER
714961.BFZC1_09480(PF16472)ER
714961.BFZC1_18605(PF00395)ER
714961.BFZC1_19410(PF01497)ER
714961.BFZC1_04618(PF01497)ER
714961.BFZC1_02277PF13127ER
714961.BFZC1_00435(PF01497)ER
714961.BFZC1_18475(PF00395)ER; (ER)
714961.BFZC1_18845(PF01497)ER
714961.BFZC1_01587(PF02415)ER
714961.BFZC1_18615(PF00395)ER
714961.BFZC1_18610(PF00395)ER
714961.BFZC1_02132(PF00395)ER
714961.BFZC1_19060(PF01497)ER
714961.BFZC1_18620(PF00395)ER
714961.BFZC1_23718(PF01497)(ER)
714961.BFZC1_09720(PF00395)ER
714961.BFZC1_18585(PF00395)ER
714961.BFZC1_12423(PF01497)ER
714961.BFZC1_19680(PF00395)ER
714961.BFZC1_17654PF13127ER
714961.BFZC1_14698(PF00395)ER
714961.BFZC1_10377(PF00395)ER
714961.BFZC1_16435(PF00395)ER
714961.BFZC1_21762(PF12733)ER
714961.BFZC1_08690(PF00395)ER
714961.BFZC1_00585(PF00395)ER
714961.BFZC1_15925(PF00395)ER
714961.BFZC1_22102(PF16472)ER
714961.BFZC1_07835(PF04127)(ER)
714961.BFZC1_19575(PF01497)ER
714961.BFZC1_20833(PF00395)(ER)
714961.BFZC1_14393(PF01497)ER
714961.BFZC1_23793(PF00395)(ER)
714961.BFZC1_18840(PF01497)(plastid)
714961.BFZC1_12603(PF02016)(mitochondrial)
714961.BFZC1_23698(PF01497)(plastid)
714961.BFZC1_21408(PF00395)(ER)
714961.BFZC1_08900(PF00395)(mitochondrial)
714961.BFZC1_04803(PF12733) (PF00395)not used
714961.BFZC1_04233(PF11563)(mitochondrial)
714961.BFZC1_01082(PF02016)(plastid)
714961.BFZC1_04908(PF12606)ER; not used
714961.BFZC1_15098(PF07934)
714961.BFZC1_24068(PF02403)
714961.BFZC1_04793(PF00395)
714961.BFZC1_10657(PF00477)
714961.BFZC1_23938(PF00395)
714961.BFZC1_23683(PF01497)
714961.BFZC1_23114(PF11563)
714961.BFZC1_21458(PF07934)
714961.BFZC1_23693(PF01497)
714961.BFZC1_14913(PF02403)
714961.BFZC1_00275(PF00395)not used
714961.BFZC1_02877(PF01497)
714961.BFZC1_02872(PF01497)
714961.BFZC1_13118(PF11563)
714961.BFZC1_21728PF02002
714961.BFZC1_01957PF09805
714961.BFZC1_13948(PF11563)
714961.BFZC1_23713(PF01497)
714961.BFZC1_16415(PF02016)
714961.BFZC1_00490(PF00395)
714961.BFZC1_16215(PF12368)
714961.BFZC1_16744(PF06941)
714961.BFZC1_21767(PF00395)not used
714961.BFZC1_11147(PF12368)
714961.BFZC1_18770(PF02016)
714961.BFZC1_04033(PF04127)
714961.BFZC1_03903(PF03630)
714961.BFZC1_05378(PF01497)
714961.BFZC1_18200(PF01497)
714961.BFZC1_10692(PF00395)
714961.BFZC1_01072(PF02016)
714961.BFZC1_08530(PF16804)
714961.BFZC1_20538(PF06941)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================