Effective results for Listeria seeligeri FSL N1-067 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 34 proteins (9 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
702453.NT03LS_0258(PF05738)ER
702453.NT03LS_2526(PF05738)ER
702453.NT03LS_2437(PF05738)ER
702453.NT03LS_0250(PF06777)(mitochondrial)
702453.NT03LS_3485PF00834(ER)
702453.NT03LS_0921(PF06824)(mitochondrial)
702453.NT03LS_0557(PF06100)(mitochondrial)
702453.NT03LS_1020(PF08950)(mitochondrial)
702453.NT03LS_0899(PF06574)
702453.NT03LS_1070(PF14526)
702453.NT03LS_3017PF00834not used
702453.NT03LS_3019PF00834not used
702453.NT03LS_1271(PF14526)not used
702453.NT03LS_0796(PF00847)not used
702453.NT03LS_1325PF00165not used
702453.NT03LS_0900(PF06574)not used
702453.NT03LS_0904aPF02948not used
702453.NT03LS_0592PF00834
702453.NT03LS_0586PF00834
702453.NT03LS_0563(PF14526)
702453.NT03LS_2736(PF14526)
702453.NT03LS_1606(PF06574)
702453.NT03LS_1771(PF02410)not used
702453.NT03LS_1770(PF02410)not used
702453.NT03LS_0008(PF02527)
702453.NT03LS_0559(PF06100)not used
702453.NT03LS_2897(PF05738)not used
702453.NT03LS_1374(PF02527)
702453.NT03LS_0621(PF06824)
702453.NT03LS_0021(PF05738)not used
702453.NT03LS_2145PF00834
702453.NT03LS_0146PF00165
702453.NT03LS_2353(PF06824)
702453.NT03LS_0477(PF14526)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================