Effective results for Desulfotomaculum nigrificans DSM 574 (eggnog40)

Summary

Number of putative secreted proteins: 100
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 100 proteins (13 high, 87 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
696369.DesniDRAFT_0953(PF10588) PF02906 PF02256 (PF12838)
696369.DesniDRAFT_0612(PF00037) PF02906(mitochondrial)
696369.DesniDRAFT_2009(PF10588) PF02906 PF02256 (PF12838)
696369.DesniDRAFT_2014PF02906 (PF12838)(mitochondrial)
696369.DesniDRAFT_1331(PF06541)ER
696369.DesniDRAFT_0112(PF00037)(mitochondrial)
696369.DesniDRAFT_2421(PF03601)ER
696369.DesniDRAFT_1427(PF10589) (PF12838) (PF01257)
696369.DesniDRAFT_2886(PF00037)ER; (ER)
696369.DesniDRAFT_2887(PF06541)ER
696369.DesniDRAFT_0393(PF06032)(ER)
696369.DesniDRAFT_0958(PF10588) PF02906 PF02256
696369.DesniDRAFT_1947(PF10588) PF02906 PF02256
696369.DesniDRAFT_1948(PF10589) (PF12838) (PF01257)
696369.DesniDRAFT_1348(PF03601)ER
696369.DesniDRAFT_2800(PF06032)(ER)
696369.DesniDRAFT_1291(PF01077) (PF12838)
696369.DesniDRAFT_0818(PF05034) (PF07476)
696369.DesniDRAFT_1428(PF10588) (PF12838)
696369.DesniDRAFT_1973(PF10589) (PF00037)
696369.DesniDRAFT_0957(PF10589) (PF01257)
696369.DesniDRAFT_0952(PF10589) (PF00037)
696369.DesniDRAFT_1823(PF00037) (PF12838)
696369.DesniDRAFT_0447PF02906 PF02256
696369.DesniDRAFT_0307PF02906 PF02256
696369.DesniDRAFT_2005(PF01077) (PF12838)
696369.DesniDRAFT_2010(PF10588) (PF12838)
696369.DesniDRAFT_1894(PF10589) (PF00037)
696369.DesniDRAFT_0751(PF01472)
696369.DesniDRAFT_1745(PF02915)
696369.DesniDRAFT_1532(PF12838)
696369.DesniDRAFT_0119(PF13597)
696369.DesniDRAFT_0200(PF01077)
696369.DesniDRAFT_0590(PF12838)
696369.DesniDRAFT_0138(PF13534)
696369.DesniDRAFT_2184(PF02915)
696369.DesniDRAFT_1294(PF03063)
696369.DesniDRAFT_1426(PF01257)
696369.DesniDRAFT_2550PF03071
696369.DesniDRAFT_2885(PF13534)
696369.DesniDRAFT_0556(PF12838)
696369.DesniDRAFT_0396(PF06032)
696369.DesniDRAFT_0956(PF01257)
696369.DesniDRAFT_0951(PF01257)
696369.DesniDRAFT_2437(PF14330)
696369.DesniDRAFT_2337PF13513
696369.DesniDRAFT_0494(PF02915)
696369.DesniDRAFT_0497(PF12838)
696369.DesniDRAFT_0383(PF00162)
696369.DesniDRAFT_1949(PF01257)
696369.DesniDRAFT_2529(PF13534)
696369.DesniDRAFT_1172(PF09419)
696369.DesniDRAFT_1373(PF12838)
696369.DesniDRAFT_1001(PF01077)
696369.DesniDRAFT_0534(PF06968)
696369.DesniDRAFT_1765(PF02915)
696369.DesniDRAFT_1957(PF03063)
696369.DesniDRAFT_1956(PF01472)
696369.DesniDRAFT_1347(PF03601)
696369.DesniDRAFT_2416(PF03601)
696369.DesniDRAFT_0709(PF06968)
696369.DesniDRAFT_0708(PF06968)
696369.DesniDRAFT_1034PF02002
696369.DesniDRAFT_0525(PF06968)
696369.DesniDRAFT_1726PF02906
696369.DesniDRAFT_0143(PF00037)
696369.DesniDRAFT_0458(PF00037)
696369.DesniDRAFT_1329(PF12838)
696369.DesniDRAFT_2506(PF01077)
696369.DesniDRAFT_2353(PF03063)
696369.DesniDRAFT_2288(PF03063)
696369.DesniDRAFT_1550(PF01472)
696369.DesniDRAFT_0732(PF00037)not used
696369.DesniDRAFT_1020(PF03601)
696369.DesniDRAFT_0196(PF13597)
696369.DesniDRAFT_0462(PF00162)
696369.DesniDRAFT_2340(PF02915)
696369.DesniDRAFT_2769(PF13597)
696369.DesniDRAFT_1838(PF00037)
696369.DesniDRAFT_1837(PF00037)
696369.DesniDRAFT_2111(PF00037)
696369.DesniDRAFT_1827(PF13534)
696369.DesniDRAFT_1824(PF12838)
696369.DesniDRAFT_1821(PF13534)
696369.DesniDRAFT_0409(PF02915)
696369.DesniDRAFT_1217(PF12838)
696369.DesniDRAFT_0302PF02906
696369.DesniDRAFT_2132(PF01969)
696369.DesniDRAFT_2310(PF06541)
696369.DesniDRAFT_1687(PF16760)
696369.DesniDRAFT_1206(PF01969)
696369.DesniDRAFT_1209(PF01969)not used
696369.DesniDRAFT_0647(PF12838)
696369.DesniDRAFT_1474(PF01077)
696369.DesniDRAFT_1475(PF01077)
696369.DesniDRAFT_2876(PF13534)not used
696369.DesniDRAFT_0653(PF00037)
696369.DesniDRAFT_0650(PF00037)
696369.DesniDRAFT_1895(PF00037)
696369.DesniDRAFT_1893(PF01257)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================