Effective results for Serratia odorifera DSM 4582 (eggnog40)

Summary

Number of putative secreted proteins: 655
- Predicted by EffectiveT3: 173 (high confidence), 306 (low confidence)
- Predicted by EffectiveCCBD: 28 within, 24 before, 51 behind expected region 25..70aa
- Predicted by T4SEpre: 84
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 18 proteins (1 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
667129.HMPREF0758_3570+ER
667129.HMPREF0758_2584+ER
667129.HMPREF0758_3410(>)mitochondrial
667129.HMPREF0758_4861(>)ER
667129.HMPREF0758_2587+ER
667129.HMPREF0758_4882+(ER)
667129.HMPREF0758_4050+(mitochondrial)
667129.HMPREF0758_3061+ER
667129.HMPREF0758_2594+ER
667129.HMPREF0758_0579(<)mitochondrial
667129.HMPREF0758_0418+ER
667129.HMPREF0758_5054+ER
667129.HMPREF0758_3988(>)ER
667129.HMPREF0758_0183(>)(ER)
667129.HMPREF0758_3187+ER
667129.HMPREF0758_0413+(mitochondrial)
667129.HMPREF0758_0218+(mitochondrial)
667129.HMPREF0758_5042(<)ER
667129.HMPREF0758_4312+(mitochondrial); plastid
667129.HMPREF0758_4319(>)ER
667129.HMPREF0758_4073+ER
667129.HMPREF0758_4868(>)(ER); ER
667129.HMPREF0758_1686+mitochondrial; (mitochondrial)
667129.HMPREF0758_0774(>)(ER); (plastid)
667129.HMPREF0758_3684+(mitochondrial); (plastid)
667129.HMPREF0758_3871(>)ER
667129.HMPREF0758_0428+(ER)
667129.HMPREF0758_1826+ER
667129.HMPREF0758_0767+(mitochondrial)
667129.HMPREF0758_3454+(ER); ER
667129.HMPREF0758_2932+(mitochondrial); (plastid)
667129.HMPREF0758_5010+mitochondrial; (mitochondrial)
667129.HMPREF0758_0434+(mitochondrial); plastid
667129.HMPREF0758_1355+(mitochondrial); (plastid)
667129.HMPREF0758_1356(PF00328)ER
667129.HMPREF0758_1799(>)mitochondrial; (mitochondrial)
667129.HMPREF0758_2949+ER
667129.HMPREF0758_0842(>)(ER)
667129.HMPREF0758_3160+ER
667129.HMPREF0758_2304+ER
667129.HMPREF0758_2276(>)ER
667129.HMPREF0758_0831+ER
667129.HMPREF0758_4356(>)ER
667129.HMPREF0758_2339+ER
667129.HMPREF0758_1430(<)(ER)
667129.HMPREF0758_2997(PF00328)ER
667129.HMPREF0758_1955+ER
667129.HMPREF0758_1081+(ER)
667129.HMPREF0758_0861+ER
667129.HMPREF0758_2962+ER; (ER)
667129.HMPREF0758_1611(>)ER
667129.HMPREF0758_3364+ER
667129.HMPREF0758_2369+(mitochondrial); mitochondrial
667129.HMPREF0758_2368+mitochondrial
667129.HMPREF0758_0876+ER
667129.HMPREF0758_0114++(plastid)
667129.HMPREF0758_3617+mitochondrial
667129.HMPREF0758_3371+ER
667129.HMPREF0758_1028+ER
667129.HMPREF0758_0483+(mitochondrial)
667129.HMPREF0758_3600+ER
667129.HMPREF0758_4744+ER
667129.HMPREF0758_2933+(mitochondrial)
667129.HMPREF0758_1294(>)mitochondrial
667129.HMPREF0758_3321(>)ER
667129.HMPREF0758_1445(>)(ER); (plastid)
667129.HMPREF0758_2509(PF16485)(mitochondrial)
667129.HMPREF0758_1854+ER
667129.HMPREF0758_2650+ER
667129.HMPREF0758_4753(>)ER
667129.HMPREF0758_4010(>)ER
667129.HMPREF0758_3260+(mitochondrial)
667129.HMPREF0758_2409(PF07224)ER
667129.HMPREF0758_4831+ER
667129.HMPREF0758_3624(>)ER
667129.HMPREF0758_4822+ER
667129.HMPREF0758_0374+ER
667129.HMPREF0758_4918+ER
667129.HMPREF0758_3430+(mitochondrial)
667129.HMPREF0758_2095+ER
667129.HMPREF0758_4857(PF02112)ER
667129.HMPREF0758_0607(>)ER
667129.HMPREF0758_0601+mitochondrial
667129.HMPREF0758_1867(>)ER
667129.HMPREF0758_1699+(mitochondrial)
667129.HMPREF0758_2044+ER; (ER)
667129.HMPREF0758_2856(+)(ER)
667129.HMPREF0758_2273(+)(mitochondrial)
667129.HMPREF0758_2271(+)ER; (ER)
667129.HMPREF0758_2580+(<)
667129.HMPREF0758_1924++
667129.HMPREF0758_4516(+)ER
667129.HMPREF0758_0293(>)(ER)
667129.HMPREF0758_4299(+)mitochondrial; (mitochondrial)
667129.HMPREF0758_0996+(>)
667129.HMPREF0758_4086+(mitochondrial)
667129.HMPREF0758_4990++not used
667129.HMPREF0758_0967(PF00164)mitochondrial; not used
667129.HMPREF0758_0968(PF00164)(mitochondrial); not used
667129.HMPREF0758_1224(>)(mitochondrial)
667129.HMPREF0758_2758+(mitochondrial)
667129.HMPREF0758_0421(+)ER
667129.HMPREF0758_4673+(plastid)
667129.HMPREF0758_0241(>)(plastid)
667129.HMPREF0758_4412+(ER)
667129.HMPREF0758_1549(+)ER
667129.HMPREF0758_5068+(plastid)
667129.HMPREF0758_0309(+)(mitochondrial)
667129.HMPREF0758_2790(<)mitochondrial; not used
667129.HMPREF0758_4158(>)(ER)
667129.HMPREF0758_0028(+)(mitochondrial)
667129.HMPREF0758_4320(+)(mitochondrial)
667129.HMPREF0758_3232+plastid
667129.HMPREF0758_2781+(plastid)
667129.HMPREF0758_2434(+)(mitochondrial)
667129.HMPREF0758_1333(<)+
667129.HMPREF0758_3229++
667129.HMPREF0758_1887+(ER)
667129.HMPREF0758_0914(+)(ER); plastid
667129.HMPREF0758_4209(>)(mitochondrial)
667129.HMPREF0758_1504(>)(ER)
667129.HMPREF0758_1754(+)(mitochondrial)
667129.HMPREF0758_1266(PF04127)(plastid)
667129.HMPREF0758_0276(+)(ER)
667129.HMPREF0758_4965+(mitochondrial)
667129.HMPREF0758_4416++
667129.HMPREF0758_4599(+)mitochondrial
667129.HMPREF0758_1291+(>)
667129.HMPREF0758_1027(+)ER
667129.HMPREF0758_3016+(plastid)
667129.HMPREF0758_1057(<)(ER)
667129.HMPREF0758_1363+(plastid)
667129.HMPREF0758_3219(+)(mitochondrial)
667129.HMPREF0758_2111(+)(ER)
667129.HMPREF0758_1275+(plastid)
667129.HMPREF0758_2875(+)(mitochondrial)
667129.HMPREF0758_1494(>)(plastid)
667129.HMPREF0758_3520+(mitochondrial); not used
667129.HMPREF0758_4812+(plastid)
667129.HMPREF0758_4536(>)+
667129.HMPREF0758_1267+(PF04127)
667129.HMPREF0758_4123+
667129.HMPREF0758_4961(<)not used
667129.HMPREF0758_4963+
667129.HMPREF0758_0356+
667129.HMPREF0758_1254+not used
667129.HMPREF0758_4042(<)
667129.HMPREF0758_4046+
667129.HMPREF0758_2858+not used
667129.HMPREF0758_4283(<)
667129.HMPREF0758_3845(<)
667129.HMPREF0758_3250+
667129.HMPREF0758_3925(+)(>)
667129.HMPREF0758_1743+
667129.HMPREF0758_1741+not used
667129.HMPREF0758_0610+
667129.HMPREF0758_3076+
667129.HMPREF0758_0506+
667129.HMPREF0758_1819+
667129.HMPREF0758_2354(<)
667129.HMPREF0758_1664+
667129.HMPREF0758_2292(<)
667129.HMPREF0758_3883+
667129.HMPREF0758_4466+
667129.HMPREF0758_0341+
667129.HMPREF0758_4296(>)
667129.HMPREF0758_0758(+)(plastid)
667129.HMPREF0758_4185+
667129.HMPREF0758_0196+
667129.HMPREF0758_3400(+)(mitochondrial)
667129.HMPREF0758_1752+
667129.HMPREF0758_3930(>)
667129.HMPREF0758_3063+
667129.HMPREF0758_3062+
667129.HMPREF0758_2620(+)+
667129.HMPREF0758_0406+
667129.HMPREF0758_3067+
667129.HMPREF0758_4522+
667129.HMPREF0758_4748+
667129.HMPREF0758_0991(>)
667129.HMPREF0758_0971(+)(plastid)
667129.HMPREF0758_0308+
667129.HMPREF0758_2903(<)
667129.HMPREF0758_3129+
667129.HMPREF0758_2833+
667129.HMPREF0758_3276(<)
667129.HMPREF0758_1691+
667129.HMPREF0758_3470+
667129.HMPREF0758_3477(PF16473)
667129.HMPREF0758_4089(>)
667129.HMPREF0758_3500+
667129.HMPREF0758_2053+not used
667129.HMPREF0758_2453(>)
667129.HMPREF0758_0563(>)
667129.HMPREF0758_0411+
667129.HMPREF0758_0410(+)plastid
667129.HMPREF0758_2126+
667129.HMPREF0758_4174(+)(plastid)
667129.HMPREF0758_2009+
667129.HMPREF0758_3869(>)not used
667129.HMPREF0758_3868+not used
667129.HMPREF0758_1597(>)
667129.HMPREF0758_3994+
667129.HMPREF0758_1169+
667129.HMPREF0758_1222(PF16473)
667129.HMPREF0758_5108+not used
667129.HMPREF0758_1078+
667129.HMPREF0758_2806+
667129.HMPREF0758_1683+
667129.HMPREF0758_0178(+)(ER); not used
667129.HMPREF0758_4092(>)
667129.HMPREF0758_0082+
667129.HMPREF0758_2020+
667129.HMPREF0758_2486(>)
667129.HMPREF0758_2334+
667129.HMPREF0758_0360+not used
667129.HMPREF0758_0420+
667129.HMPREF0758_4955+
667129.HMPREF0758_2152+
667129.HMPREF0758_4402PF13895
667129.HMPREF0758_4675+
667129.HMPREF0758_5076+
667129.HMPREF0758_5071+
667129.HMPREF0758_1220+
667129.HMPREF0758_3331(+)(plastid)
667129.HMPREF0758_3857+
667129.HMPREF0758_1765+
667129.HMPREF0758_3094+
667129.HMPREF0758_3728(+)(ER)
667129.HMPREF0758_5101+not used
667129.HMPREF0758_0317(>)
667129.HMPREF0758_4240(<)
667129.HMPREF0758_0369+
667129.HMPREF0758_3459+
667129.HMPREF0758_2031(+)(plastid)
667129.HMPREF0758_4931+
667129.HMPREF0758_2038(+)(plastid)
667129.HMPREF0758_4721(+)(plastid)
667129.HMPREF0758_2498+
667129.HMPREF0758_4644+
667129.HMPREF0758_0651+
667129.HMPREF0758_0109+
667129.HMPREF0758_5061+
667129.HMPREF0758_4799+
667129.HMPREF0758_4790(<)
667129.HMPREF0758_2958+
667129.HMPREF0758_2253+not used
667129.HMPREF0758_0230(>)
667129.HMPREF0758_1700+
667129.HMPREF0758_0158+
667129.HMPREF0758_3200(+)(plastid)
667129.HMPREF0758_3208+
667129.HMPREF0758_2007(>)
667129.HMPREF0758_3150+
667129.HMPREF0758_3835(+)+
667129.HMPREF0758_3942+
667129.HMPREF0758_0331(>)
667129.HMPREF0758_2922+
667129.HMPREF0758_0208+
667129.HMPREF0758_0209+
667129.HMPREF0758_0149+
667129.HMPREF0758_0085+
667129.HMPREF0758_1414+
667129.HMPREF0758_1529+
667129.HMPREF0758_0656+
667129.HMPREF0758_3161+
667129.HMPREF0758_3167+
667129.HMPREF0758_2307+
667129.HMPREF0758_0929+
667129.HMPREF0758_0939+
667129.HMPREF0758_3953(+)(plastid)
667129.HMPREF0758_4357+
667129.HMPREF0758_1312+
667129.HMPREF0758_3471(+)(mitochondrial); not used
667129.HMPREF0758_0216+
667129.HMPREF0758_2994+
667129.HMPREF0758_4129+
667129.HMPREF0758_0689(PF15588)
667129.HMPREF0758_0682+not used
667129.HMPREF0758_3223+
667129.HMPREF0758_3220+
667129.HMPREF0758_0046+
667129.HMPREF0758_0596+
667129.HMPREF0758_3245+
667129.HMPREF0758_0660+
667129.HMPREF0758_0661(+)(mitochondrial)
667129.HMPREF0758_2759+
667129.HMPREF0758_2684+
667129.HMPREF0758_0918+
667129.HMPREF0758_4698+
667129.HMPREF0758_0862+
667129.HMPREF0758_0865(+)(PF01715)
667129.HMPREF0758_0866(PF01715)
667129.HMPREF0758_0120+
667129.HMPREF0758_0125+
667129.HMPREF0758_4110+
667129.HMPREF0758_0692+
667129.HMPREF0758_0695(+)+
667129.HMPREF0758_0055+
667129.HMPREF0758_4979+
667129.HMPREF0758_4973+
667129.HMPREF0758_3103+
667129.HMPREF0758_3100+
667129.HMPREF0758_5066+
667129.HMPREF0758_2216+
667129.HMPREF0758_2210+
667129.HMPREF0758_2182+
667129.HMPREF0758_3586+not used
667129.HMPREF0758_3807+
667129.HMPREF0758_2365+
667129.HMPREF0758_3974+
667129.HMPREF0758_0903(+)(mitochondrial)
667129.HMPREF0758_0905+
667129.HMPREF0758_0118+
667129.HMPREF0758_0871+
667129.HMPREF0758_0870+
667129.HMPREF0758_2560+
667129.HMPREF0758_1339+
667129.HMPREF0758_0271+
667129.HMPREF0758_0274(<)not used
667129.HMPREF0758_1396+
667129.HMPREF0758_0060(>)
667129.HMPREF0758_0062(+)(PF16473)
667129.HMPREF0758_2424(+)(<)
667129.HMPREF0758_2352+
667129.HMPREF0758_2732+
667129.HMPREF0758_2223+
667129.HMPREF0758_4749+
667129.HMPREF0758_4759+not used
667129.HMPREF0758_2721+
667129.HMPREF0758_3955(+)(plastid)
667129.HMPREF0758_4726+
667129.HMPREF0758_2208(+)(mitochondrial)
667129.HMPREF0758_1293(<)
667129.HMPREF0758_4740(PF01163)
667129.HMPREF0758_4004+
667129.HMPREF0758_2436+
667129.HMPREF0758_2500+
667129.HMPREF0758_0493+
667129.HMPREF0758_2723+
667129.HMPREF0758_3008(>)
667129.HMPREF0758_2659(>)
667129.HMPREF0758_4395+
667129.HMPREF0758_4392(PF01163)
667129.HMPREF0758_4758+
667129.HMPREF0758_4557+
667129.HMPREF0758_1079+
667129.HMPREF0758_0256(+)(mitochondrial)
667129.HMPREF0758_2884+
667129.HMPREF0758_0259+
667129.HMPREF0758_4959+
667129.HMPREF0758_4757+
667129.HMPREF0758_4162+
667129.HMPREF0758_3014+
667129.HMPREF0758_2513+
667129.HMPREF0758_3494+
667129.HMPREF0758_3281(<)
667129.HMPREF0758_3754+
667129.HMPREF0758_4421+
667129.HMPREF0758_1437+
667129.HMPREF0758_4905+
667129.HMPREF0758_1803+
667129.HMPREF0758_2240+
667129.HMPREF0758_1843(+)(mitochondrial)
667129.HMPREF0758_2661+
667129.HMPREF0758_1866+
667129.HMPREF0758_3752(>)
667129.HMPREF0758_4380+
667129.HMPREF0758_3320+
667129.HMPREF0758_2897+
667129.HMPREF0758_3657+
667129.HMPREF0758_3213+
667129.HMPREF0758_0018(+)(mitochondrial); not used
667129.HMPREF0758_1096+
667129.HMPREF0758_4022+
667129.HMPREF0758_4023(<)
667129.HMPREF0758_3722+
667129.HMPREF0758_2565(+)+
667129.HMPREF0758_3381+
667129.HMPREF0758_3435+
667129.HMPREF0758_1426+
667129.HMPREF0758_0115(+)(mitochondrial)
667129.HMPREF0758_2679(+)(mitochondrial)
667129.HMPREF0758_4719+
667129.HMPREF0758_3145+
667129.HMPREF0758_4446+
667129.HMPREF0758_2842+
667129.HMPREF0758_1485+
667129.HMPREF0758_0855+
667129.HMPREF0758_3894+
667129.HMPREF0758_1739+not used
667129.HMPREF0758_2977+
667129.HMPREF0758_3298(+)mitochondrial; not used
667129.HMPREF0758_4703+
667129.HMPREF0758_4704+
667129.HMPREF0758_1693+
667129.HMPREF0758_0805(<)
667129.HMPREF0758_1751(>)
667129.HMPREF0758_1750+
667129.HMPREF0758_1131(<)
667129.HMPREF0758_3572(+)
667129.HMPREF0758_4285(+)
667129.HMPREF0758_3252(+)
667129.HMPREF0758_4997(+)
667129.HMPREF0758_0618(+)
667129.HMPREF0758_2071(+)
667129.HMPREF0758_3678(+)
667129.HMPREF0758_2612(+)
667129.HMPREF0758_1929(+)
667129.HMPREF0758_1926(+)not used
667129.HMPREF0758_1665(+)
667129.HMPREF0758_4515(+)
667129.HMPREF0758_1144(+)
667129.HMPREF0758_2917(+)
667129.HMPREF0758_4054(+)
667129.HMPREF0758_2739(+)
667129.HMPREF0758_1409(+)
667129.HMPREF0758_0756(+)
667129.HMPREF0758_0754(+)
667129.HMPREF0758_3718(+)
667129.HMPREF0758_0572(+)
667129.HMPREF0758_0408(+)
667129.HMPREF0758_4617(+)
667129.HMPREF0758_4615(+)
667129.HMPREF0758_4506(+)
667129.HMPREF0758_4505(+)
667129.HMPREF0758_0972(+)
667129.HMPREF0758_1236(+)
667129.HMPREF0758_0372(+)
667129.HMPREF0758_1580+
667129.HMPREF0758_2830(+)
667129.HMPREF0758_4266(+)
667129.HMPREF0758_1373(+)
667129.HMPREF0758_3376(+)
667129.HMPREF0758_4081(+)
667129.HMPREF0758_1837(+)
667129.HMPREF0758_4668(+)
667129.HMPREF0758_2477(+)
667129.HMPREF0758_3176(+)not used
667129.HMPREF0758_5102(+)not used
667129.HMPREF0758_1163(+)
667129.HMPREF0758_1225(+)
667129.HMPREF0758_4360(+)
667129.HMPREF0758_3462(+)
667129.HMPREF0758_0081(+)not used
667129.HMPREF0758_4099(+)
667129.HMPREF0758_0554(+)
667129.HMPREF0758_0559(+)
667129.HMPREF0758_1871(+)
667129.HMPREF0758_1464(+)
667129.HMPREF0758_4733(+)
667129.HMPREF0758_2158(+)
667129.HMPREF0758_1959(+)
667129.HMPREF0758_1917(+)
667129.HMPREF0758_5077(+)
667129.HMPREF0758_3851(+)not used
667129.HMPREF0758_3332(+)
667129.HMPREF0758_0955(+)
667129.HMPREF0758_4608(+)not used
667129.HMPREF0758_4540(+)
667129.HMPREF0758_2201(+)
667129.HMPREF0758_4148(+)
667129.HMPREF0758_0701(+)
667129.HMPREF0758_2813(+)
667129.HMPREF0758_2319(+)
667129.HMPREF0758_0160(+)
667129.HMPREF0758_3456(+)
667129.HMPREF0758_0361(+)
667129.HMPREF0758_1789(+)
667129.HMPREF0758_1782(+)
667129.HMPREF0758_3096(+)
667129.HMPREF0758_4928(+)
667129.HMPREF0758_1030(+)
667129.HMPREF0758_5060(+)
667129.HMPREF0758_0564(+)
667129.HMPREF0758_4794(+)
667129.HMPREF0758_4420(+)
667129.HMPREF0758_0899(+)
667129.HMPREF0758_1358(+)
667129.HMPREF0758_2950(+)not used
667129.HMPREF0758_2957(+)
667129.HMPREF0758_1206(+)
667129.HMPREF0758_1351(+)
667129.HMPREF0758_4337(+)
667129.HMPREF0758_0305(+)
667129.HMPREF0758_1370(+)
667129.HMPREF0758_3882(+)
667129.HMPREF0758_1189(+)
667129.HMPREF0758_1688(+)
667129.HMPREF0758_4147(+)
667129.HMPREF0758_2795(+)
667129.HMPREF0758_3440(+)not used
667129.HMPREF0758_3204(+)
667129.HMPREF0758_2310(+)
667129.HMPREF0758_0446(+)
667129.HMPREF0758_1973(+)
667129.HMPREF0758_5091(+)
667129.HMPREF0758_1150(+)
667129.HMPREF0758_0937(+)
667129.HMPREF0758_2940(+)
667129.HMPREF0758_1849(+)
667129.HMPREF0758_1328(+)
667129.HMPREF0758_1564(+)
667129.HMPREF0758_0844(+)
667129.HMPREF0758_0202(+)
667129.HMPREF0758_3933(+)not used
667129.HMPREF0758_1412(+)
667129.HMPREF0758_3545(+)
667129.HMPREF0758_2014(+)
667129.HMPREF0758_3168(+)
667129.HMPREF0758_2787(+)
667129.HMPREF0758_2161(+)
667129.HMPREF0758_2432(+)
667129.HMPREF0758_3197(+)
667129.HMPREF0758_4090(+)
667129.HMPREF0758_0833(+)
667129.HMPREF0758_1310(+)
667129.HMPREF0758_3651(+)
667129.HMPREF0758_0219(+)
667129.HMPREF0758_0136(+)
667129.HMPREF0758_0683(+)
667129.HMPREF0758_3228(+)
667129.HMPREF0758_3222(+)
667129.HMPREF0758_3550(+)
667129.HMPREF0758_3555(+)not used
667129.HMPREF0758_4901(+)
667129.HMPREF0758_3316(+)
667129.HMPREF0758_3178(+)
667129.HMPREF0758_3177(+)not used
667129.HMPREF0758_2376(+)
667129.HMPREF0758_2688(+)
667129.HMPREF0758_3813(+)
667129.HMPREF0758_1080+
667129.HMPREF0758_3960(+)
667129.HMPREF0758_2967(+)
667129.HMPREF0758_4347(+)
667129.HMPREF0758_0121(+)
667129.HMPREF0758_4220(+)
667129.HMPREF0758_1918(+)
667129.HMPREF0758_3698(+)
667129.HMPREF0758_0693(+)not used
667129.HMPREF0758_3699(+)
667129.HMPREF0758_0587(+)
667129.HMPREF0758_3764(+)
667129.HMPREF0758_1651(+)
667129.HMPREF0758_3102(+)
667129.HMPREF0758_0677(+)
667129.HMPREF0758_0673(+)
667129.HMPREF0758_0476(+)
667129.HMPREF0758_3612(+)
667129.HMPREF0758_2188(+)
667129.HMPREF0758_2181(+)
667129.HMPREF0758_4224(+)
667129.HMPREF0758_1989(+)
667129.HMPREF0758_3979(+)
667129.HMPREF0758_1187(+)not used
667129.HMPREF0758_3188(+)
667129.HMPREF0758_1158(+)
667129.HMPREF0758_4213(+)
667129.HMPREF0758_1332(+)
667129.HMPREF0758_0119(+)
667129.HMPREF0758_2092(+)
667129.HMPREF0758_3209(+)
667129.HMPREF0758_2215(+)
667129.HMPREF0758_0067(+)
667129.HMPREF0758_1416(+)
667129.HMPREF0758_1828(+)
667129.HMPREF0758_1415(+)
667129.HMPREF0758_1606(+)
667129.HMPREF0758_4728(+)not used
667129.HMPREF0758_3170(+)
667129.HMPREF0758_4815(+)
667129.HMPREF0758_4816(+)
667129.HMPREF0758_2426(+)not used
667129.HMPREF0758_4727(+)
667129.HMPREF0758_3601(+)
667129.HMPREF0758_3602(+)
667129.HMPREF0758_0401(+)
667129.HMPREF0758_4586(+)
667129.HMPREF0758_1212(+)
667129.HMPREF0758_1198(+)
667129.HMPREF0758_0804(+)
667129.HMPREF0758_4568(+)
667129.HMPREF0758_2430(+)
667129.HMPREF0758_0107(+)not used
667129.HMPREF0758_3422(+)
667129.HMPREF0758_3740(+)
667129.HMPREF0758_3341(+)
667129.HMPREF0758_2507(+)
667129.HMPREF0758_4971(+)
667129.HMPREF0758_2349(+)
667129.HMPREF0758_3638(+)
667129.HMPREF0758_4438(+)
667129.HMPREF0758_3126(+)not used
667129.HMPREF0758_3163(+)
667129.HMPREF0758_0258(+)
667129.HMPREF0758_2882(+)
667129.HMPREF0758_2542(+)
667129.HMPREF0758_1704(+)
667129.HMPREF0758_4168(+)
667129.HMPREF0758_2865(+)
667129.HMPREF0758_4018(+)
667129.HMPREF0758_4016(+)
667129.HMPREF0758_4011(+)not used
667129.HMPREF0758_3289(+)
667129.HMPREF0758_0337(+)
667129.HMPREF0758_0719(+)
667129.HMPREF0758_4422(+)
667129.HMPREF0758_2089(+)
667129.HMPREF0758_0538(+)
667129.HMPREF0758_2399(+)
667129.HMPREF0758_3928(+)
667129.HMPREF0758_3922(+)
667129.HMPREF0758_2557(+)
667129.HMPREF0758_3019(+)
667129.HMPREF0758_4385(+)
667129.HMPREF0758_1068(+)
667129.HMPREF0758_1060(+)
667129.HMPREF0758_0014(+)
667129.HMPREF0758_5008(+)
667129.HMPREF0758_3723(+)
667129.HMPREF0758_1493(+)
667129.HMPREF0758_1490(+)
667129.HMPREF0758_0707(+)
667129.HMPREF0758_3525(+)
667129.HMPREF0758_4843(+)
667129.HMPREF0758_4840(+)
667129.HMPREF0758_0632(+)
667129.HMPREF0758_0528(+)
667129.HMPREF0758_2674(+)
667129.HMPREF0758_4712(+)
667129.HMPREF0758_4946(+)not used
667129.HMPREF0758_1379(+)
667129.HMPREF0758_2388(+)
667129.HMPREF0758_3939(+)
667129.HMPREF0758_1643(+)
667129.HMPREF0758_0924(+)
667129.HMPREF0758_5003(+)
667129.HMPREF0758_0510(+)
667129.HMPREF0758_1121(+)
667129.HMPREF0758_1468(+)
667129.HMPREF0758_2322(+)
667129.HMPREF0758_1261(+)
667129.HMPREF0758_0481(+)
667129.HMPREF0758_3897(+)
667129.HMPREF0758_1284(+)
667129.HMPREF0758_3734(+)
667129.HMPREF0758_3736(+)
667129.HMPREF0758_1737(+)
667129.HMPREF0758_1736(+)
667129.HMPREF0758_3649(+)
667129.HMPREF0758_4708(+)
667129.HMPREF0758_2667(+)
667129.HMPREF0758_1345(+)
667129.HMPREF0758_3619(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.3 (3/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.2 (2/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.375 (11/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================