Effective results for Ruminococcus torques L2-14 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 61 proteins (4 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
657313.RTO_06050(PF01496)(mitochondrial)
657313.RTO_22970(PF00137)ER
657313.RTO_06040(PF00137)ER
657313.RTO_05730(PF06541)ER
657313.RTO_26640(PF01554)(ER)
657313.RTO_26630(PF01554)(ER)
657313.RTO_06520(PF06541)mitochondrial
657313.RTO_11110(PF01416)(mitochondrial)
657313.RTO_06240(PF00137)ER
657313.RTO_15880(PF01554)(ER)
657313.RTO_11170(PF06541)ER
657313.RTO_14920(PF01554)(mitochondrial)
657313.RTO_13840(PF16875) (PF16874)
657313.RTO_25230(PF16875) (PF16874)
657313.RTO_04110(PF01554)(ER)
657313.RTO_15410(PF01554)(ER)
657313.RTO_02770(PF16875) (PF16874)
657313.RTO_13450(PF01554)(ER)
657313.RTO_15850(PF14691)
657313.RTO_25480(PF01554)
657313.RTO_22960(PF01496)
657313.RTO_00270(PF01554)
657313.RTO_15060(PF01554)
657313.RTO_15330(PF14691)
657313.RTO_21770(PF14691)
657313.RTO_03090(PF14691)
657313.RTO_30710(PF03432)
657313.RTO_10780(PF01554)
657313.RTO_29420(PF01416)
657313.RTO_24480(PF01416)
657313.RTO_20960(PF03432)
657313.RTO_11240(PF03432)
657313.RTO_16940(PF01795)
657313.RTO_00230(PF01554)
657313.RTO_22980(PF01990)
657313.RTO_24270(PF14691)
657313.RTO_07090(PF01554)
657313.RTO_00130(PF01554)
657313.RTO_18850(PF13155)
657313.RTO_30570PF14311
657313.RTO_24450(PF01554)
657313.RTO_29880(PF01795)
657313.RTO_22660PF07959
657313.RTO_06030(PF01991)
657313.RTO_29670(PF01554)
657313.RTO_12630(PF03432)
657313.RTO_28080(PF03432)
657313.RTO_06010(PF01990)
657313.RTO_05210(PF13155)
657313.RTO_11700(PF03432)
657313.RTO_04500(PF13151)
657313.RTO_03980(PF02475)
657313.RTO_24350(PF01554)
657313.RTO_15870PF14311
657313.RTO_04180PF11443
657313.RTO_06290(PF14691)
657313.RTO_01910(PF13155)
657313.RTO_30670(PF13155)
657313.RTO_14930(PF01554)
657313.RTO_14020(PF01554)
657313.RTO_12460(PF01554)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================